Variant report

Variant	rs7142810
Chromosome Location	chr14:85708513-85708514
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11852160	0.83[ASN][1000 genomes]
rs12050312	0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs12433960	0.83[ASN][1000 genomes]
rs12891822	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1530325	0.81[AFR][1000 genomes]
rs34699201	0.83[ASN][1000 genomes]
rs35869709	0.83[ASN][1000 genomes]
rs7158899	0.87[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401331	chr14:85332747-85716351	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832846	chr14:85517736-85715650	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3381198	chr14:85690248-85709087	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv902168	chr14:85693904-85716792	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	esv2422273	chr14:85703149-85767292	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:85701200-85715200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr14:85706200-85715600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr14:85707200-85709200	Enhancers	HSMM	muscle
4	chr14:85707200-85710800	Enhancers	Fetal Brain Male	brain
5	chr14:85707200-85710800	Enhancers	Fetal Brain Female	brain
6	chr14:85707400-85709800	Enhancers	Fetal Heart	heart
7	chr14:85707400-85710400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr14:85707600-85713800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr14:85707800-85709400	Enhancers	HSMMtube	muscle
10	chr14:85707800-85710000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr14:85708200-85708600	Enhancers	Colon Smooth Muscle	Colon
12	chr14:85708200-85713200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr14:85708200-85715400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr14:85708400-85708800	Weak transcription	Fetal Muscle Leg	muscle
15	chr14:85708400-85708800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr14:85708400-85716000	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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