Variant report

Variant	rs7158899
Chromosome Location	chr14:85707916-85707917
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr14:85707118-85708030	ECC-1	luminal epithelium:	n/a	n/a
2	TCF12	chr14:85707204-85708037	ECC-1	luminal epithelium:	n/a	n/a
3	FOXM1	chr14:85707152-85708063	ECC-1	luminal epithelium:	n/a	n/a
4	TCF12	chr14:85707185-85707992	ECC-1	luminal epithelium:	n/a	n/a
5	TEAD4	chr14:85707150-85708047	ECC-1	luminal epithelium:	n/a	n/a
6	EP300	chr14:85707171-85708121	ECC-1	luminal epithelium:	n/a	n/a
7	NFIC	chr14:85707203-85708012	ECC-1	luminal epithelium:	n/a	n/a

Variant related genes	Relation type
ENSG00000259044	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11852160	0.84[ASN][1000 genomes]
rs12433960	0.84[ASN][1000 genomes]
rs12891822	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34699201	0.84[ASN][1000 genomes]
rs35869709	0.84[ASN][1000 genomes]
rs7142810	0.87[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401331	chr14:85332747-85716351	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832846	chr14:85517736-85715650	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3381198	chr14:85690248-85709087	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv902168	chr14:85693904-85716792	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	esv2422273	chr14:85703149-85767292	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv3414307	chr14:85705849-85708247	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:85701200-85715200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr14:85705600-85708000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr14:85706200-85715600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr14:85707200-85708000	Flanking Active TSS	Fetal Kidney	kidney
5	chr14:85707200-85708000	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr14:85707200-85708000	Flanking Active TSS	HUVEC	blood vessel
7	chr14:85707200-85708000	Active TSS	NH-A	brain
8	chr14:85707200-85708200	Enhancers	Fetal Stomach	stomach
9	chr14:85707200-85708400	Active TSS	Ovary	ovary
10	chr14:85707200-85709200	Enhancers	HSMM	muscle
11	chr14:85707200-85710800	Enhancers	Fetal Brain Male	brain
12	chr14:85707200-85710800	Enhancers	Fetal Brain Female	brain
13	chr14:85707400-85708000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr14:85707400-85708000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:85707400-85708000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr14:85707400-85708000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr14:85707400-85708000	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr14:85707400-85708000	Enhancers	Adipose Nuclei	Adipose
19	chr14:85707400-85708000	Enhancers	Brain Germinal Matrix	brain
20	chr14:85707400-85708000	Enhancers	Pancreas	Pancrea
21	chr14:85707400-85708200	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr14:85707400-85708200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr14:85707400-85708400	Enhancers	Fetal Muscle Leg	muscle
24	chr14:85707400-85709800	Enhancers	Fetal Heart	heart
25	chr14:85707400-85710400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr14:85707600-85708000	Enhancers	H1 Cell Line	embryonic stem cell
27	chr14:85707600-85708000	Active TSS	Colon Smooth Muscle	Colon
28	chr14:85707600-85713800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr14:85707800-85708000	Enhancers	Muscle Satellite Cultured Cells	--
30	chr14:85707800-85708200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr14:85707800-85708400	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr14:85707800-85709400	Enhancers	HSMMtube	muscle
33	chr14:85707800-85710000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links