Variant report

Variant	rs71428166
Chromosome Location	chr2:125758753-125758754
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12992489	0.95[AMR][1000 genomes]
rs12993585	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12995266	0.90[AMR][1000 genomes]
rs13014302	0.86[AMR][1000 genomes]
rs13024027	0.95[AMR][1000 genomes]
rs13025135	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2421353	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34250117	0.95[AMR][1000 genomes]
rs34308133	0.95[AMR][1000 genomes]
rs34495630	0.95[AMR][1000 genomes]
rs34528547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35120173	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35364524	0.90[AMR][1000 genomes]
rs35614087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35636983	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs36108797	0.95[AMR][1000 genomes]
rs36138820	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71428174	0.84[AMR][1000 genomes]
rs71428188	0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834361	chr2:125601081-125810992	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv874991	chr2:125692490-125901811	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv834362	chr2:125733921-125907451	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125755000-125759800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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