Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12992489	0.95[AMR][1000 genomes]
rs12993585	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12995266	0.90[AMR][1000 genomes]
rs13014302	0.86[AMR][1000 genomes]
rs13024027	0.95[AMR][1000 genomes]
rs13025135	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13025825	1.00[YRI][hapmap]
rs34250117	0.95[AMR][1000 genomes]
rs34308133	0.95[AMR][1000 genomes]
rs34495630	0.95[AMR][1000 genomes]
rs34528547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35120173	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35364524	0.90[AMR][1000 genomes]
rs35614087	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35636983	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs36108797	0.95[AMR][1000 genomes]
rs36138820	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71428166	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71428174	0.84[AMR][1000 genomes]
rs71428188	0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834361	chr2:125601081-125810992	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv874991	chr2:125692490-125901811	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv834362	chr2:125733921-125907451	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125751800-125756800	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr2:125752400-125753000	Enhancers	H9 Cell Line	embryonic stem cell
3	chr2:125752400-125753000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr2:125752400-125753400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:125752400-125754400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr2:125752400-125755000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr2:125752400-125755400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr2:125752400-125755600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr2:125752400-125755800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr2:125752600-125755200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr2:125752800-125753800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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