Variant report

Variant	rs71439287
Chromosome Location	chrX:107637291-107637292
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10153786	0.87[AMR][1000 genomes]
rs10167744	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10167955	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10175778	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10176352	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10176641	1.00[ASN][1000 genomes]
rs10183585	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10199306	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10202413	0.82[EUR][1000 genomes]
rs10207018	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10207038	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10490207	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11884718	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11884732	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11885401	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11887546	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11887643	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11889015	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11890878	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11891508	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11891921	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11894296	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11894882	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11895025	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11899204	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11903986	1.00[ASN][1000 genomes]
rs12329007	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13006841	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13383126	1.00[ASN][1000 genomes]
rs13384452	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13385280	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13389962	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13398048	1.00[ASN][1000 genomes]
rs13398809	1.00[ASN][1000 genomes]
rs13400484	1.00[ASN][1000 genomes]
rs13403847	0.83[EUR][1000 genomes]
rs13408531	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13414508	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13428581	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13428681	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1366424	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1428574	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17025234	1.00[ASN][1000 genomes]
rs17025260	1.00[ASN][1000 genomes]
rs17025271	1.00[ASN][1000 genomes]
rs17025453	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17025510	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17025570	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17025628	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17038992	1.00[ASN][1000 genomes]
rs17570537	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1896712	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2033230	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2041827	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28380530	1.00[ASN][1000 genomes]
rs28660667	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs374153	1.00[ASN][1000 genomes]
rs390579	1.00[ASN][1000 genomes]
rs400673	1.00[ASN][1000 genomes]
rs405416	1.00[ASN][1000 genomes]
rs423177	1.00[ASN][1000 genomes]
rs440387	1.00[ASN][1000 genomes]
rs56092525	0.83[EUR][1000 genomes]
rs6704907	1.00[ASN][1000 genomes]
rs6720270	1.00[ASN][1000 genomes]
rs6728644	1.00[ASN][1000 genomes]
rs6729089	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6758015	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6760003	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73924568	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73924573	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73926129	0.91[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs73926130	0.91[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73927124	1.00[ASN][1000 genomes]
rs741320	1.00[ASN][1000 genomes]
rs7562916	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7563045	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7563290	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7563445	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7567178	1.00[ASN][1000 genomes]
rs7570501	1.00[ASN][1000 genomes]
rs7570522	1.00[ASN][1000 genomes]
rs7575693	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7575802	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7583602	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7589951	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7601672	1.00[ASN][1000 genomes]
rs7601991	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7602006	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7602342	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7602377	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7605482	1.00[ASN][1000 genomes]
rs7607992	1.00[ASN][1000 genomes]
rs9309053	1.00[ASN][1000 genomes]
rs9653516	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529426	chrX:107562118-108021257	Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:107625400-107638200	Weak transcription	Hela-S3	cervix
2	chrX:107632600-107638400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chrX:107635000-107638600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chrX:107635000-107638800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chrX:107635000-107638800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chrX:107635000-107639600	Weak transcription	Fetal Heart	heart
7	chrX:107635200-107639600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chrX:107635400-107639600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chrX:107636000-107637800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chrX:107636200-107638400	Weak transcription	A549	lung
11	chrX:107636800-107638600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chrX:107637200-107637400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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