Variant report

Variant	rs7144915
Chromosome Location	chr14:65085050-65085051
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65082704..65085685-chr14:65090924..65093500,2	K562	blood:
2	chr14:65084248..65085892-chr14:65092660..65095587,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs57127480	0.82[AFR][1000 genomes]
rs7159463	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65077400-65085400	Weak transcription	Placenta	Placenta
2	chr14:65079600-65085600	Weak transcription	Spleen	Spleen
3	chr14:65079600-65085800	Weak transcription	A549	lung
4	chr14:65079600-65086200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr14:65079600-65093800	Weak transcription	Right Atrium	heart
6	chr14:65079800-65085600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr14:65080200-65086000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr14:65081600-65085800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr14:65081800-65085400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr14:65081800-65085600	Weak transcription	Fetal Intestine Large	intestine
11	chr14:65081800-65091800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr14:65082000-65085600	Weak transcription	Esophagus	oesophagus
13	chr14:65082000-65086200	Weak transcription	Fetal Stomach	stomach
14	chr14:65082000-65091800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr14:65082200-65085400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr14:65084800-65085200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr14:65084800-65085600	Enhancers	NHEK	skin
18	chr14:65084800-65085800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr14:65084800-65085800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr14:65085000-65086000	Enhancers	Hela-S3	cervix
21	chr14:65085000-65086400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr14:65085000-65086400	Enhancers	HMEC	breast
23	chr14:65085000-65086600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links