Variant report

Variant	rs7159463
Chromosome Location	chr14:65105116-65105117
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:64968284..64972899-chr14:65099732..65106261,9	MCF-7	breast:
2	chr14:65101924..65103493-chr14:65105064..65108032,2	MCF-7	breast:
3	chr14:65098847..65101532-chr14:65103067..65106443,3	MCF-7	breast:
4	chr14:65005746..65011576-chr14:65100375..65105465,11	MCF-7	breast:
5	chr14:65105112..65107828-chr14:65169669..65172570,3	MCF-7	breast:
6	chr14:65005436..65008898-chr14:65101749..65105481,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000089775	Chromatin interaction
ENSG00000126822	Chromatin interaction
ENSG00000126804	Chromatin interaction
ENSG00000259116	Chromatin interaction
ENSG00000126803	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10151495	0.86[EUR][1000 genomes]
rs2167764	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7144915	0.83[AFR][1000 genomes]
rs7159445	0.81[EUR][1000 genomes]
rs910365	0.95[EUR][1000 genomes]
rs9671808	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65096000-65105600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr14:65096000-65106200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr14:65099400-65111600	Weak transcription	Osteobl	bone
4	chr14:65103000-65106800	Enhancers	Fetal Intestine Small	intestine
5	chr14:65103000-65109600	Enhancers	Placenta	Placenta
6	chr14:65103200-65106600	Enhancers	NHEK	skin
7	chr14:65103200-65106800	Enhancers	NHLF	lung
8	chr14:65103400-65105200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr14:65103400-65105200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr14:65103400-65106200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr14:65103400-65106400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr14:65103400-65106400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr14:65103400-65106400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr14:65103400-65107000	Enhancers	Liver	Liver
15	chr14:65103400-65111000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr14:65103600-65105200	Enhancers	HMEC	breast
17	chr14:65103600-65106600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr14:65103800-65106000	Weak transcription	GM12878-XiMat	blood
19	chr14:65103800-65106400	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr14:65103800-65111400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr14:65103800-65111600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr14:65103800-65111800	Weak transcription	Fetal Heart	heart
23	chr14:65103800-65112400	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr14:65104000-65105400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr14:65104000-65106200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr14:65104000-65108800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr14:65104200-65108800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr14:65104400-65105200	Enhancers	Fetal Intestine Large	intestine
29	chr14:65104400-65106800	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr14:65104600-65105200	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr14:65104600-65106000	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr14:65104600-65106000	Weak transcription	A549	lung
33	chr14:65104600-65106600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr14:65104800-65106800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr14:65105000-65105400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr14:65105000-65105600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr14:65105000-65105800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr14:65105000-65106000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr14:65105000-65106400	Weak transcription	Adipose Nuclei	Adipose
40	chr14:65105000-65106400	Weak transcription	Fetal Lung	lung
41	chr14:65105000-65107000	Enhancers	NH-A	brain
42	chr14:65105000-65110400	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links