Variant report

Variant	rs7144975
Chromosome Location	chr14:81112334-81112335
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11159470	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12589019	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12589109	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17519	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34201956	0.81[EUR][1000 genomes]
rs4903927	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4903930	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4903931	0.81[EUR][1000 genomes]
rs66523962	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7141390	0.83[EUR][1000 genomes]
rs7144036	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7156452	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7158869	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7159302	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8008167	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81105400-81112800	Weak transcription	HSMM	muscle
2	chr14:81106200-81112400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr14:81106200-81135400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:81108200-81145800	Weak transcription	Fetal Thymus	thymus
5	chr14:81108600-81116800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr14:81110600-81124600	Weak transcription	Dnd41	blood
7	chr14:81110800-81112400	Weak transcription	Thymus	Thymus
8	chr14:81110800-81124400	Weak transcription	Brain Substantia Nigra	brain
9	chr14:81112000-81112400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr14:81112200-81112600	Enhancers	A549	lung
11	chr14:81112200-81112800	Enhancers	HepG2	liver
12	chr14:81112200-81112800	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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