Variant report

Variant	rs71452676
Chromosome Location	chr12:119264805-119264806
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11069093	0.89[EUR][1000 genomes]
rs12312645	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35246951	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55816879	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58509908	0.92[EUR][1000 genomes]
rs7136389	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71452677	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7311401	0.89[EUR][1000 genomes]
rs7311415	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7959432	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7963971	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7974231	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv930978	chr12:118866332-119450600	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv2757516	chr12:119229694-119294323	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759916	chr12:119229694-119294323	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv826525	chr12:119247463-119290732	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119259800-119265000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr12:119264600-119265600	Enhancers	Brain Substantia Nigra	brain
3	chr12:119264600-119265800	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr12:119264800-119265000	Flanking Active TSS	Brain Hippocampus Middle	brain
5	chr12:119264800-119265400	Enhancers	Brain Anterior Caudate	brain
6	chr12:119264800-119265800	Enhancers	Brain Angular Gyrus	brain
7	chr12:119264800-119265800	Enhancers	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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