Variant report

Variant	rs71453883
Chromosome Location	chr12:64695734-64695735
allele	CC/TT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:64687158..64689074-chr12:64693462..64696115,3	K562	blood:

Variant related genes	Relation type
ENSG00000185306	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1002392	0.81[ASN][1000 genomes]
rs10748005	0.81[ASN][1000 genomes]
rs10748006	0.82[ASN][1000 genomes]
rs10784391	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10784392	0.82[ASN][1000 genomes]
rs10784394	0.82[ASN][1000 genomes]
rs10784395	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10784396	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10784397	0.82[ASN][1000 genomes]
rs10784398	0.82[ASN][1000 genomes]
rs10784400	0.85[ASN][1000 genomes]
rs10878129	0.81[ASN][1000 genomes]
rs10878130	0.81[ASN][1000 genomes]
rs10878131	0.81[ASN][1000 genomes]
rs10878132	0.81[ASN][1000 genomes]
rs10878134	0.82[ASN][1000 genomes]
rs10878135	0.82[ASN][1000 genomes]
rs10878140	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10878141	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10878142	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11175307	0.81[ASN][1000 genomes]
rs11175308	0.81[ASN][1000 genomes]
rs12297747	0.81[ASN][1000 genomes]
rs12581905	0.82[ASN][1000 genomes]
rs1347576	0.84[ASN][1000 genomes]
rs1436362	0.85[ASN][1000 genomes]
rs1436363	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1545098	0.82[ASN][1000 genomes]
rs1865790	0.86[ASN][1000 genomes]
rs2010889	0.81[ASN][1000 genomes]
rs2010893	0.81[ASN][1000 genomes]
rs2082950	0.86[ASN][1000 genomes]
rs2164503	0.82[ASN][1000 genomes]
rs2878281	0.81[ASN][1000 genomes]
rs4076831	0.82[ASN][1000 genomes]
rs4491342	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4763145	0.81[ASN][1000 genomes]
rs4763146	0.81[ASN][1000 genomes]
rs4763147	0.81[ASN][1000 genomes]
rs4763148	0.81[ASN][1000 genomes]
rs4763149	0.81[ASN][1000 genomes]
rs4763150	0.81[ASN][1000 genomes]
rs5015811	0.84[ASN][1000 genomes]
rs5015817	0.81[ASN][1000 genomes]
rs5015818	0.81[ASN][1000 genomes]
rs61931479	0.84[ASN][1000 genomes]
rs6581534	0.81[ASN][1000 genomes]
rs7303208	0.82[ASN][1000 genomes]
rs7306905	0.82[ASN][1000 genomes]
rs7313249	0.84[ASN][1000 genomes]
rs7316630	0.83[ASN][1000 genomes]
rs7954838	0.82[ASN][1000 genomes]
rs7955726	0.84[ASN][1000 genomes]
rs7962466	0.82[ASN][1000 genomes]
rs7964830	0.84[ASN][1000 genomes]
rs7969382	0.84[ASN][1000 genomes]
rs7971787	0.82[ASN][1000 genomes]
rs7973109	0.84[ASN][1000 genomes]
rs7975823	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7976659	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351487	chr12:64420364-64763950	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3509287	chr12:64526217-64736995	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3509288	chr12:64526217-64736995	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64687800-64705000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:64693000-64701800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:64694400-64696200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr12:64694400-64698000	Weak transcription	Fetal Kidney	kidney

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