Variant report

Variant	rs4491342
Chromosome Location	chr12:64662719-64662720
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs1002392	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10735919	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10748005	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10748006	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10784389	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10784390	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10784391	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10784392	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10784394	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10784395	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10784396	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10784397	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10784398	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10784400	0.82[EUR][1000 genomes]
rs10878128	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10878129	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10878130	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10878131	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10878132	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10878134	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10878135	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11175302	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11175307	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11175308	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1162974	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1162976	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1162977	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1178702	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1178703	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1185525	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12296514	0.82[ASN][1000 genomes]
rs12297747	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12298172	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12309193	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12321083	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12581905	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1347576	0.82[EUR][1000 genomes]
rs1436362	0.80[EUR][1000 genomes]
rs1545098	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1808129	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1865790	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1865791	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1865797	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1865798	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1898220	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1978794	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2010889	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2010893	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2164503	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2334885	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2878281	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2917499	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2917501	0.84[ASN][1000 genomes]
rs4076831	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4628780	0.84[ASN][1000 genomes]
rs4631982	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4763009	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4763010	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4763143	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4763144	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4763145	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4763146	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4763147	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4763148	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4763149	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4763150	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5015811	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs5015814	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs5015816	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs5015817	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5015818	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56160145	0.82[EUR][1000 genomes]
rs59282249	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61931479	0.81[EUR][1000 genomes]
rs61933465	0.80[ASN][1000 genomes]
rs6581534	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71453883	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7303208	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7306905	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7313249	0.81[EUR][1000 genomes]
rs7313429	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7954838	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7956726	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7962466	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7969382	0.82[EUR][1000 genomes]
rs7971787	0.84[EUR][1000 genomes]
rs7973109	0.83[EUR][1000 genomes]
rs7975823	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351487	chr12:64420364-64763950	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3509287	chr12:64526217-64736995	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3509288	chr12:64526217-64736995	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64651000-64667800	Weak transcription	Placenta	Placenta
2	chr12:64658400-64665600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:64662400-64667200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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