Variant report

Variant	rs61933465
Chromosome Location	chr12:64650524-64650525
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:64237380..64238103-chr12:64650119..64650859,2	MCF-7	breast:
2	chr12:64236358..64239279-chr12:64649135..64650753,2	MCF-7	breast:
3	chr12:64240094..64242329-chr12:64649536..64651426,2	MCF-7	breast:
4	chr12:64219544..64220917-chr12:64649566..64650605,8	MCF-7	breast:
5	chr12:64232886..64234110-chr12:64649608..64650623,12	MCF-7	breast:
6	chr12:64232878..64233896-chr12:64649649..64650593,6	MCF-7	breast:
7	chr12:64644381..64647318-chr12:64648323..64650617,4	K562	blood:

Variant related genes	Relation type
ENSG00000196935	Chromatin interaction

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs1002392	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10735919	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10748005	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10748006	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10784389	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10784390	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10784392	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10784394	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10784397	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10784398	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10784400	0.89[EUR][1000 genomes]
rs10878128	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10878129	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10878130	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10878131	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10878132	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10878134	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10878135	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10878140	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10878141	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10878142	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11175302	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11175307	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11175308	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1162974	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1162976	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1162977	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1178702	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1178703	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1185525	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12296514	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12297747	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12298172	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12309193	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12321083	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12581905	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1347576	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1436362	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1436363	0.81[ASN][1000 genomes]
rs1545098	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17100184	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1808129	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1865790	0.81[ASN][1000 genomes]
rs1865791	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1865797	0.86[ASN][1000 genomes]
rs1865798	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1898220	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1978794	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2010889	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2010893	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2082950	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2164503	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2334885	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2878281	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2917499	0.84[ASN][1000 genomes]
rs2917501	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4076831	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4491342	0.80[ASN][1000 genomes]
rs4628780	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4631982	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4763009	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4763010	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4763143	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4763144	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4763145	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4763146	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4763147	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4763148	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4763149	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4763150	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5015811	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5015814	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5015816	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5015817	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5015818	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56160145	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59282249	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61034000	0.88[EUR][1000 genomes]
rs61931479	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6581534	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7303085	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7303208	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7306905	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7313249	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7313429	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7954838	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7956726	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7962466	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7969382	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7971787	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7973109	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7976659	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9804707	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351487	chr12:64420364-64763950	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3509287	chr12:64526217-64736995	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3509288	chr12:64526217-64736995	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64645800-64650600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr12:64649000-64650600	Enhancers	Brain Hippocampus Middle	brain
3	chr12:64649200-64650600	Enhancers	Brain Cingulate Gyrus	brain
4	chr12:64649600-64650600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
5	chr12:64649600-64650600	Enhancers	Fetal Brain Male	brain
6	chr12:64650000-64650600	Enhancers	Brain Substantia Nigra	brain
7	chr12:64650200-64650600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr12:64650200-64650600	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr12:64650200-64650600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr12:64650200-64650600	Enhancers	Brain Germinal Matrix	brain
11	chr12:64650200-64650600	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr12:64650200-64650600	Enhancers	Fetal Lung	lung
13	chr12:64650400-64650600	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr12:64650400-64650600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr12:64650400-64650600	Enhancers	Brain Angular Gyrus	brain
16	chr12:64650400-64651000	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr12:64650400-64651000	Enhancers	Placenta	Placenta

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