Variant report

Variant	rs9804707
Chromosome Location	chr12:64647257-64647258
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:64615717..64617696-chr12:64646156..64650012,3	MCF-7	breast:
2	chr12:64644381..64647318-chr12:64648323..64650617,4	K562	blood:

Variant related genes	Relation type
ENSG00000243024	Chromatin interaction
ENSG00000174206	Chromatin interaction

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs1002392	0.90[CHB][hapmap];0.92[EUR][1000 genomes]
rs10735919	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10748005	0.92[EUR][1000 genomes]
rs10748006	0.90[EUR][1000 genomes]
rs10784389	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10784390	0.90[CHB][hapmap];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10784392	0.90[CHB][hapmap];0.92[EUR][1000 genomes]
rs10784394	0.90[CHB][hapmap];0.92[EUR][1000 genomes]
rs10784397	0.90[CHB][hapmap];0.92[EUR][1000 genomes]
rs10784398	0.89[CHB][hapmap];0.92[EUR][1000 genomes]
rs10784400	0.91[EUR][1000 genomes]
rs10878128	0.90[CHB][hapmap];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10878129	0.90[CHB][hapmap];0.92[EUR][1000 genomes]
rs10878130	0.90[CHB][hapmap];0.92[EUR][1000 genomes]
rs10878131	0.90[CHB][hapmap];0.92[EUR][1000 genomes]
rs10878132	0.92[EUR][1000 genomes]
rs10878134	0.90[CHB][hapmap];0.81[YRI][hapmap];0.92[EUR][1000 genomes]
rs10878135	0.82[CHB][hapmap];0.80[YRI][hapmap];0.93[EUR][1000 genomes]
rs10878140	0.88[EUR][1000 genomes]
rs10878141	0.88[EUR][1000 genomes]
rs10878142	0.84[CHB][hapmap];0.88[EUR][1000 genomes]
rs11175302	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11175307	0.90[CHB][hapmap];0.81[YRI][hapmap];0.92[EUR][1000 genomes]
rs11175308	0.89[CHB][hapmap];0.92[EUR][1000 genomes]
rs1162974	0.90[CHB][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1162976	0.90[CHB][hapmap];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1162977	0.90[CHB][hapmap];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1178702	0.90[CHB][hapmap];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1178703	0.95[CHB][hapmap];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1185525	0.90[CHB][hapmap];0.92[EUR][1000 genomes]
rs12296514	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12297747	0.92[EUR][1000 genomes]
rs12298172	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12300747	0.80[CHB][hapmap]
rs12309193	0.90[CHB][hapmap];0.87[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12321083	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12581277	0.81[JPT][hapmap]
rs12581905	0.90[CHB][hapmap];0.81[YRI][hapmap];0.93[EUR][1000 genomes]
rs1347576	0.91[EUR][1000 genomes]
rs1436362	0.85[CHB][hapmap];0.88[EUR][1000 genomes]
rs1545098	0.92[EUR][1000 genomes]
rs1695105	0.81[CHB][hapmap]
rs17100184	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1808129	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1865791	0.90[CHB][hapmap];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1865798	0.90[CHB][hapmap];0.86[EUR][1000 genomes]
rs1898220	0.90[CHB][hapmap];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1978794	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2010889	0.92[EUR][1000 genomes]
rs2010893	0.90[CHB][hapmap];0.92[EUR][1000 genomes]
rs2082950	0.87[EUR][1000 genomes]
rs2164503	0.93[EUR][1000 genomes]
rs2279740	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2334885	0.92[EUR][1000 genomes]
rs2878281	0.89[EUR][1000 genomes]
rs2917501	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4076831	0.92[EUR][1000 genomes]
rs4628780	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4631982	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4763009	0.94[CHB][hapmap];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4763010	0.90[CHB][hapmap];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4763143	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4763144	0.90[CHB][hapmap];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4763145	0.90[CHB][hapmap];0.92[EUR][1000 genomes]
rs4763146	0.90[CHB][hapmap];0.92[EUR][1000 genomes]
rs4763147	0.90[CHB][hapmap];0.93[EUR][1000 genomes]
rs4763148	0.92[EUR][1000 genomes]
rs4763149	0.92[EUR][1000 genomes]
rs4763150	0.89[CHB][hapmap];0.93[EUR][1000 genomes]
rs5015811	0.86[EUR][1000 genomes]
rs5015814	0.88[EUR][1000 genomes]
rs5015816	0.92[EUR][1000 genomes]
rs5015817	0.90[CHB][hapmap];0.92[EUR][1000 genomes]
rs5015818	0.90[CHB][hapmap];0.92[EUR][1000 genomes]
rs56160145	0.91[EUR][1000 genomes]
rs59282249	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61034000	0.90[EUR][1000 genomes]
rs61931479	0.92[EUR][1000 genomes]
rs61933465	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6581534	0.90[CHB][hapmap];0.81[YRI][hapmap];0.93[EUR][1000 genomes]
rs7303085	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7303208	0.92[EUR][1000 genomes]
rs7306905	0.90[CHB][hapmap];0.92[EUR][1000 genomes]
rs7313249	0.84[CHB][hapmap];0.92[EUR][1000 genomes]
rs7313429	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs789721	0.81[CHB][hapmap]
rs789749	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs7954838	0.92[EUR][1000 genomes]
rs7956726	0.90[CHB][hapmap];0.87[YRI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7962466	0.92[EUR][1000 genomes]
rs7969382	0.84[CHB][hapmap];0.91[EUR][1000 genomes]
rs7971787	0.93[EUR][1000 genomes]
rs7973109	0.84[CHB][hapmap];0.92[EUR][1000 genomes]
rs7975823	0.84[CHB][hapmap]
rs7976659	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351487	chr12:64420364-64763950	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3509287	chr12:64526217-64736995	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3509288	chr12:64526217-64736995	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64645800-64650600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr12:64646200-64648200	Enhancers	Brain Anterior Caudate	brain
3	chr12:64646200-64648400	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr12:64646600-64648200	Enhancers	Brain Substantia Nigra	brain
5	chr12:64646800-64647600	Enhancers	GM12878-XiMat	blood
6	chr12:64646800-64649200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr12:64647000-64647400	Active TSS	Brain Hippocampus Middle	brain
8	chr12:64647000-64647400	Enhancers	NHDF-Ad	bronchial
9	chr12:64647000-64649200	Weak transcription	NHLF	lung
10	chr12:64647000-64649600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr12:64647000-64650200	Weak transcription	Fetal Lung	lung
12	chr12:64647200-64649000	Weak transcription	Brain Angular Gyrus	brain
13	chr12:64647200-64650200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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