Variant report

Variant	rs17100184
Chromosome Location	chr12:64618264-64618265
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs1002392	0.93[CEU][hapmap];0.83[CHB][hapmap];0.82[CHD][hapmap];0.95[GIH][hapmap];0.85[MEX][hapmap];0.96[TSI][hapmap];0.85[EUR][1000 genomes]
rs10735919	0.85[EUR][1000 genomes]
rs10748005	0.87[EUR][1000 genomes]
rs10748006	0.83[EUR][1000 genomes]
rs10784389	0.86[EUR][1000 genomes]
rs10784390	0.85[CEU][hapmap];0.82[CHB][hapmap];0.85[EUR][1000 genomes]
rs10784392	0.82[CHB][hapmap];0.85[EUR][1000 genomes]
rs10784394	0.93[CEU][hapmap];0.83[CHB][hapmap];0.81[CHD][hapmap];0.95[GIH][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap];0.85[EUR][1000 genomes]
rs10784397	0.93[CEU][hapmap];0.83[CHB][hapmap];0.85[EUR][1000 genomes]
rs10784398	0.93[CEU][hapmap];0.81[CHB][hapmap];0.85[EUR][1000 genomes]
rs10784400	0.84[EUR][1000 genomes]
rs10878128	0.86[CEU][hapmap];0.83[CHB][hapmap];0.85[EUR][1000 genomes]
rs10878129	0.92[CEU][hapmap];0.82[CHB][hapmap];0.85[EUR][1000 genomes]
rs10878130	0.93[CEU][hapmap];0.83[CHB][hapmap];0.85[EUR][1000 genomes]
rs10878131	0.93[CEU][hapmap];0.83[CHB][hapmap];0.85[EUR][1000 genomes]
rs10878132	0.85[EUR][1000 genomes]
rs10878134	0.93[CEU][hapmap];0.83[CHB][hapmap];0.85[EUR][1000 genomes]
rs10878135	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs10878140	0.81[EUR][1000 genomes]
rs10878141	0.81[EUR][1000 genomes]
rs10878142	0.93[CEU][hapmap];0.95[GIH][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap];0.81[EUR][1000 genomes]
rs11175302	0.85[EUR][1000 genomes]
rs11175307	0.93[CEU][hapmap];0.83[CHB][hapmap];0.85[EUR][1000 genomes]
rs11175308	0.93[CEU][hapmap];0.81[CHB][hapmap];0.85[EUR][1000 genomes]
rs1162974	0.93[CEU][hapmap];0.83[CHB][hapmap];0.85[EUR][1000 genomes]
rs1162976	0.93[CEU][hapmap];0.83[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.85[EUR][1000 genomes]
rs1162977	0.93[CEU][hapmap];0.83[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap];0.85[EUR][1000 genomes]
rs1178702	0.92[CEU][hapmap];0.82[CHB][hapmap];0.85[EUR][1000 genomes]
rs1178703	0.86[CHB][hapmap];0.85[EUR][1000 genomes]
rs1185525	0.82[CHB][hapmap];0.85[EUR][1000 genomes]
rs12297747	0.85[EUR][1000 genomes]
rs12298172	0.86[EUR][1000 genomes]
rs12303938	0.81[GIH][hapmap]
rs12309193	0.93[CEU][hapmap];0.83[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12321083	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12581277	0.82[JPT][hapmap]
rs12581905	0.93[CEU][hapmap];0.83[CHB][hapmap];0.81[CHD][hapmap];0.95[GIH][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap];0.86[EUR][1000 genomes]
rs1347576	0.84[EUR][1000 genomes]
rs1436362	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs1545098	0.85[EUR][1000 genomes]
rs1657054	0.85[ASN][1000 genomes]
rs17223151	0.81[GIH][hapmap]
rs1808129	0.86[EUR][1000 genomes]
rs1865791	0.90[CEU][hapmap];0.82[CHB][hapmap];0.85[EUR][1000 genomes]
rs1865798	0.83[CHB][hapmap]
rs1898220	0.93[CEU][hapmap];0.82[CHB][hapmap];0.84[EUR][1000 genomes]
rs1978794	0.85[EUR][1000 genomes]
rs2010889	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs2010893	0.93[CEU][hapmap];0.83[CHB][hapmap];0.85[EUR][1000 genomes]
rs2082950	0.80[EUR][1000 genomes]
rs2164503	0.86[EUR][1000 genomes]
rs2279740	0.91[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap]
rs2334885	0.85[EUR][1000 genomes]
rs2878281	0.82[EUR][1000 genomes]
rs2917501	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4076831	0.85[EUR][1000 genomes]
rs4628780	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4631982	0.85[EUR][1000 genomes]
rs4763009	0.90[CEU][hapmap];0.85[CHB][hapmap];0.85[EUR][1000 genomes]
rs4763010	0.93[CEU][hapmap];0.83[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap];0.85[EUR][1000 genomes]
rs4763143	0.83[EUR][1000 genomes]
rs4763144	0.93[CEU][hapmap];0.83[CHB][hapmap];0.85[EUR][1000 genomes]
rs4763145	0.92[CEU][hapmap];0.83[CHB][hapmap];0.85[EUR][1000 genomes]
rs4763146	0.86[CEU][hapmap];0.83[CHB][hapmap];0.85[EUR][1000 genomes]
rs4763147	0.86[CEU][hapmap];0.83[CHB][hapmap];0.86[EUR][1000 genomes]
rs4763148	0.85[EUR][1000 genomes]
rs4763149	0.85[EUR][1000 genomes]
rs4763150	0.93[CEU][hapmap];0.81[CHB][hapmap];0.86[EUR][1000 genomes]
rs5015816	0.85[EUR][1000 genomes]
rs5015817	0.86[CEU][hapmap];0.83[CHB][hapmap];0.85[EUR][1000 genomes]
rs5015818	0.93[CEU][hapmap];0.83[CHB][hapmap];0.85[EUR][1000 genomes]
rs56160145	0.84[EUR][1000 genomes]
rs59282249	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61034000	0.83[EUR][1000 genomes]
rs61931479	0.84[EUR][1000 genomes]
rs61933465	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6581534	0.93[CEU][hapmap];0.83[CHB][hapmap];0.81[CHD][hapmap];0.95[GIH][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap];0.86[EUR][1000 genomes]
rs7303085	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7303208	0.85[EUR][1000 genomes]
rs7306905	0.93[CEU][hapmap];0.83[CHB][hapmap];0.85[EUR][1000 genomes]
rs7313249	0.93[CEU][hapmap];0.80[CHD][hapmap];0.93[GIH][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap];0.84[EUR][1000 genomes]
rs7313429	0.86[EUR][1000 genomes]
rs789749	0.81[JPT][hapmap]
rs7954838	0.85[EUR][1000 genomes]
rs7955726	0.83[GIH][hapmap]
rs7956726	0.93[CEU][hapmap];0.83[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.86[EUR][1000 genomes]
rs7962466	0.85[EUR][1000 genomes]
rs7969382	0.93[CEU][hapmap];0.95[GIH][hapmap];0.93[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs7971787	0.86[EUR][1000 genomes]
rs7973109	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs7975823	0.93[CEU][hapmap]
rs7976659	0.81[EUR][1000 genomes]
rs9804707	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351487	chr12:64420364-64763950	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3509287	chr12:64526217-64736995	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3509288	chr12:64526217-64736995	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17100184	RASSF3	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64616600-64626000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr12:64616600-64626200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr12:64616800-64623000	Weak transcription	Brain Angular Gyrus	brain
4	chr12:64617000-64623000	Weak transcription	Brain Substantia Nigra	brain

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