The 2.0 version of rSNPBase

Variant report

Variant rs71455399
Chromosome Location chr12:11808556-11808557
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:119 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:11803600-11809800 Flanking Active TSS Primary neutrophils fromperipheralblood blood
2 chr12:11804200-11814000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
3 chr12:11804600-11810600 Weak transcription Placenta Amnion Placenta Amnion
4 chr12:11804800-11809800 Flanking Active TSS Monocytes-CD14+_RO01746 blood
5 chr12:11805000-11808800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
6 chr12:11805000-11809000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
7 chr12:11805200-11809200 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
8 chr12:11805600-11809000 Weak transcription NHEK skin
9 chr12:11805800-11808800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
10 chr12:11805800-11808800 Enhancers Pancreas Pancrea
11 chr12:11806000-11809400 Weak transcription ES-WA7 Cell Line embryonic stem cell
12 chr12:11806000-11810200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
13 chr12:11806000-11812800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
14 chr12:11806000-11813000 Enhancers Cortex derived primary cultured neurospheres brain
15 chr12:11806000-11813600 Weak transcription Fetal Intestine Large intestine
16 chr12:11806000-11814200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
17 chr12:11806200-11808800 Enhancers Fetal Muscle Leg muscle
18 chr12:11806200-11809600 Enhancers Primary B cells from peripheral blood blood
19 chr12:11806200-11815800 Weak transcription Pancreatic Islets Pancreatic Islet
20 chr12:11806200-11816600 Weak transcription Hela-S3 cervix
21 chr12:11806400-11808600 Enhancers Rectal Smooth Muscle rectum
22 chr12:11806400-11808800 Enhancers Colon Smooth Muscle Colon
23 chr12:11806400-11808800 Enhancers Fetal Lung lung
24 chr12:11806400-11809000 Weak transcription HUES64 Cell Line embryonic stem cell
25 chr12:11806400-11809200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
26 chr12:11806400-11809200 Weak transcription HUES6 Cell Line embryonic stem cell
27 chr12:11806400-11809200 Weak transcription Placenta Placenta
28 chr12:11806400-11809400 Weak transcription H1 Cell Line embryonic stem cell
29 chr12:11806400-11809400 Weak transcription H9 Cell Line embryonic stem cell
30 chr12:11806400-11809400 Weak transcription A549 lung
31 chr12:11806400-11810200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
32 chr12:11806400-11810600 Enhancers Primary monocytes fromperipheralblood blood
33 chr12:11806400-11810600 Weak transcription Brain Germinal Matrix brain
34 chr12:11806400-11811400 Weak transcription Muscle Satellite Cultured Cells --
35 chr12:11806400-11811400 Weak transcription Brain Inferior Temporal Lobe brain
36 chr12:11806400-11811400 Weak transcription NHDF-Ad bronchial
37 chr12:11806400-11811600 Weak transcription Brain Cingulate Gyrus brain
38 chr12:11806400-11811800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
39 chr12:11806400-11813200 Enhancers Primary T helper 17 cells PMA-I stimulated --
40 chr12:11806400-11814000 Weak transcription Colonic Mucosa Colon
41 chr12:11806400-11815800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
42 chr12:11806600-11808600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
43 chr12:11806600-11808600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
44 chr12:11806600-11808600 Enhancers Primary T helper naive cells from peripheral blood blood
45 chr12:11806600-11808800 Enhancers Primary T helper cells PMA-I stimulated --
46 chr12:11806600-11809000 Weak transcription HMEC breast
47 chr12:11806600-11809200 Weak transcription ES-I3 Cell Line embryonic stem cell
48 chr12:11806600-11809400 Weak transcription iPS-20b Cell Line embryonic stem cell
49 chr12:11806600-11810000 Weak transcription HUES48 Cell Line embryonic stem cell
50 chr12:11806600-11810000 Weak transcription Osteobl bone

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Last update: Aug 31, 2015