Variant report

Variant	rs71457681
Chromosome Location	chr12:33206148-33206149
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12811328	0.87[EUR][1000 genomes]
rs12827254	0.87[EUR][1000 genomes]
rs12827744	0.87[EUR][1000 genomes]
rs12827864	0.87[EUR][1000 genomes]
rs17553487	0.87[EUR][1000 genomes]
rs34018607	0.87[EUR][1000 genomes]
rs34202049	0.87[EUR][1000 genomes]
rs34234620	0.87[EUR][1000 genomes]
rs34398102	0.87[EUR][1000 genomes]
rs34942504	0.87[EUR][1000 genomes]
rs35398283	0.87[EUR][1000 genomes]
rs35607659	0.87[EUR][1000 genomes]
rs35681913	0.87[EUR][1000 genomes]
rs35760728	0.87[EUR][1000 genomes]
rs35848741	0.87[EUR][1000 genomes]
rs35942647	0.87[EUR][1000 genomes]
rs71457669	0.87[EUR][1000 genomes]
rs71457671	0.87[EUR][1000 genomes]
rs71457675	0.87[EUR][1000 genomes]
rs71457678	0.87[EUR][1000 genomes]
rs71457684	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530421	chr12:32825335-33465991	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv832367	chr12:33063644-33298967	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1039909	chr12:33132909-33244419	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1053849	chr12:33132909-33279169	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1044931	chr12:33179957-33307362	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:33201600-33209200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr12:33205600-33206200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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