Variant report

Variant	rs71459583
Chromosome Location	chr3:93513056-93513057
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10444563	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs10444564	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11172698	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11172718	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11172728	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11172893	0.90[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs11173310	0.85[AFR][1000 genomes]
rs11173533	0.85[AFR][1000 genomes]
rs11495468	0.86[AMR][1000 genomes]
rs11495470	0.86[AMR][1000 genomes]
rs11495518	0.86[AMR][1000 genomes]
rs11495519	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11495520	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11495540	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11495590	0.85[AFR][1000 genomes]
rs11514137	0.86[AMR][1000 genomes]
rs11514158	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11514184	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs11514225	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11519834	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11519862	0.85[AFR][1000 genomes]
rs11520047	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11520050	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12368354	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12369089	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12370380	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12372008	0.90[AFR][1000 genomes]
rs2132209	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2172856	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2220902	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2386995	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2387018	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2387041	0.85[AFR][1000 genomes]
rs2387424	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2703677	0.85[AMR][1000 genomes]
rs2703688	0.84[EUR][1000 genomes]
rs28881800	0.81[AMR][1000 genomes]
rs34971260	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4397954	0.90[AFR][1000 genomes]
rs7310307	0.90[AFR][1000 genomes]
rs8189454	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs8189621	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3375759	chr3:93507123-93515343	Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
2	esv3370198	chr3:93509062-93519960	Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
3	esv3438490	chr3:93509262-93519660	Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:93510200-93513200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
2	chr3:93510200-93515600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
3	chr3:93510400-93516600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links