Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12790750	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12793035	0.93[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12807358	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1893505	0.93[ASN][1000 genomes]
rs34114480	0.86[AFR][1000 genomes]
rs34223959	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs34366947	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34376991	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34391750	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs34604180	0.93[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs34712605	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34910169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35253160	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35401637	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35538677	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs35978545	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs36067212	0.91[ASN][1000 genomes]
rs4121759	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs71476669	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71476670	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71476672	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101037400-101080800	Weak transcription	Left Ventricle	heart
2	chr11:101054800-101071000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:101059600-101063800	Weak transcription	Colon Smooth Muscle	Colon
4	chr11:101060800-101073800	Weak transcription	Ovary	ovary
5	chr11:101061000-101070600	Weak transcription	Aorta	Aorta
6	chr11:101061200-101064000	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr11:101062000-101062800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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