Variant report

Variant	rs71477852
Chromosome Location	chr10:4376000-4376001
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11252435	1.00[ASN][1000 genomes]
rs12768501	1.00[ASN][1000 genomes]
rs12783149	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12783627	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34045626	1.00[ASN][1000 genomes]
rs34348376	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34448666	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71477851	1.00[AMR][1000 genomes]
rs71477853	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3324027	chr10:4373852-4378450	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4372600-4377400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:4373600-4377000	Weak transcription	Right Atrium	heart
3	chr10:4374000-4377200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
4	chr10:4376000-4377200	Enhancers	Rectal Smooth Muscle	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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