Variant report
Variant | rs7149054 |
---|---|
Chromosome Location | chr14:34874001-34874002 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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rs_ID | r2[population] |
---|---|
rs10132233 | 0.94[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.96[TSI][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs10144582 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs10147901 | 0.91[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes] |
rs10150318 | 0.88[ASN][1000 genomes] |
rs12432137 | 0.89[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];0.89[JPT][hapmap];0.86[MEX][hapmap];0.96[TSI][hapmap];0.92[EUR][1000 genomes] |
rs12436932 | 0.88[ASN][1000 genomes] |
rs17102499 | 0.89[ASN][1000 genomes] |
rs2002517 | 0.81[CHB][hapmap];0.83[JPT][hapmap] |
rs2149904 | 0.92[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2183313 | 0.99[ASN][1000 genomes] |
rs2383594 | 0.98[ASN][1000 genomes] |
rs2383633 | 0.89[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.92[EUR][1000 genomes] |
rs2383634 | 0.81[CHB][hapmap] |
rs28375978 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2891280 | 1.00[ASN][1000 genomes] |
rs4982180 | 0.81[CHB][hapmap] |
rs4982183 | 0.81[CHB][hapmap] |
rs56241228 | 0.83[ASN][1000 genomes] |
rs56335218 | 0.99[ASN][1000 genomes] |
rs57469421 | 0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs60181481 | 0.81[ASN][1000 genomes] |
rs60275299 | 0.90[ASN][1000 genomes] |
rs7153974 | 0.89[ASN][1000 genomes] |
rs7154056 | 0.83[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7154588 | 0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs7155343 | 0.83[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7160736 | 0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs74046052 | 0.81[ASN][1000 genomes] |
rs9806112 | 0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1040980 | chr14:34345018-35255592 | Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 109 gene(s) | inside rSNPs | diseases |
2 | nsv1051104 | chr14:34592378-35007083 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
3 | nsv949738 | chr14:34616331-34990688 | Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
4 | nsv564192 | chr14:34725233-34996507 | Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
5 | nsv564193 | chr14:34728127-35000188 | Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
6 | nsv528989 | chr14:34744426-34998705 | Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
7 | nsv1054949 | chr14:34834260-34992049 | Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
8 | nsv542025 | chr14:34834260-34992049 | Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
9 | nsv1050218 | chr14:34851521-34969433 | Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr14:34872800-34874200 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
2 | chr14:34873200-34875400 | Enhancers | Primary hematopoietic stem cells | blood |
3 | chr14:34874000-34874200 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |