Variant report
Variant | rs7154588 |
---|---|
Chromosome Location | chr14:34890586-34890587 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:3 , 50 per page) page:
1
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000129521 | Chromatin interaction |
ENSG00000165389 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10132233 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10137714 | 0.89[CEU][hapmap];0.82[JPT][hapmap] |
rs10144582 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10147901 | 0.91[CHB][hapmap];0.84[JPT][hapmap] |
rs12432137 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs2002517 | 0.81[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes] |
rs2149904 | 0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs2183313 | 0.82[ASN][1000 genomes] |
rs2383594 | 0.81[ASN][1000 genomes] |
rs2383633 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs2383634 | 0.81[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes] |
rs28375978 | 0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs28521575 | 0.85[ASN][1000 genomes] |
rs28635949 | 0.82[ASN][1000 genomes] |
rs2891280 | 0.83[ASN][1000 genomes] |
rs4981241 | 0.92[ASN][1000 genomes] |
rs4982178 | 0.82[JPT][hapmap];0.93[ASN][1000 genomes] |
rs4982179 | 0.92[ASN][1000 genomes] |
rs4982180 | 0.89[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes] |
rs4982183 | 0.83[CEU][hapmap];0.82[CHB][hapmap] |
rs56241228 | 1.00[ASN][1000 genomes] |
rs56335218 | 0.82[ASN][1000 genomes] |
rs56728642 | 0.94[ASN][1000 genomes] |
rs57186368 | 0.81[ASN][1000 genomes] |
rs57469421 | 0.81[AFR][1000 genomes];0.83[ASN][1000 genomes] |
rs58663784 | 0.85[ASN][1000 genomes] |
rs7149054 | 0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs7152281 | 0.80[ASN][1000 genomes] |
rs7156841 | 0.85[ASN][1000 genomes] |
rs7160736 | 0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs74046052 | 0.98[ASN][1000 genomes] |
rs74046054 | 0.94[ASN][1000 genomes] |
rs9783638 | 0.94[ASN][1000 genomes] |
rs9806112 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs9989160 | 0.89[CEU][hapmap];0.82[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1040980 | chr14:34345018-35255592 | Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 109 gene(s) | inside rSNPs | diseases |
2 | nsv1051104 | chr14:34592378-35007083 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
3 | nsv949738 | chr14:34616331-34990688 | Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
4 | nsv564192 | chr14:34725233-34996507 | Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
5 | nsv564193 | chr14:34728127-35000188 | Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
6 | nsv528989 | chr14:34744426-34998705 | Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
7 | nsv1054949 | chr14:34834260-34992049 | Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
8 | nsv542025 | chr14:34834260-34992049 | Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
9 | nsv1050218 | chr14:34851521-34969433 | Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
10 | nsv1048369 | chr14:34886956-34974774 | Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr14:34889400-34890600 | ZNF genes & repeats | Monocytes-CD14+_RO01746 | blood |
2 | chr14:34889600-34890800 | ZNF genes & repeats | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |