Variant report

Variant	rs71501939
Chromosome Location	chr9:108612302-108612303
allele	CCA/TCC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr9:108612130-108612413	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
SLC25A6P5	TF binding region

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10739214	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10759146	0.81[ASN][1000 genomes]
rs10759147	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10816349	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10816350	0.94[ASN][1000 genomes]
rs10978309	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10978310	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10978311	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10978312	0.95[ASN][1000 genomes]
rs10978313	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1806663	0.93[ASN][1000 genomes]
rs1806664	0.93[ASN][1000 genomes]
rs2417646	0.98[ASN][1000 genomes]
rs2417647	0.98[ASN][1000 genomes]
rs28534814	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2997726	0.91[ASN][1000 genomes]
rs2997727	0.92[ASN][1000 genomes]
rs3010415	0.99[ASN][1000 genomes]
rs3010964	0.90[ASN][1000 genomes]
rs3105991	0.99[ASN][1000 genomes]
rs7019053	1.00[ASN][1000 genomes]
rs7024988	0.98[ASN][1000 genomes]
rs7030636	0.95[ASN][1000 genomes]
rs7854091	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7854144	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7862281	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7865672	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7869341	0.95[ASN][1000 genomes]
rs7869461	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9299115	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893693	chr9:108427062-108683134	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv893694	chr9:108486533-108854018	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1041073	chr9:108535813-108731343	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1036849	chr9:108582944-108651205	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1052684	chr9:108582944-108730280	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv615140	chr9:108592589-108725567	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv831679	chr9:108603112-108785347	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108598400-108615600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:108609600-108616000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:108611600-108612800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:108611800-108612600	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr9:108612000-108613400	Enhancers	Primary hematopoietic stem cells	blood
6	chr9:108612000-108613600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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