Variant report

Variant	rs3010964
Chromosome Location	chr9:108607153-108607154
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10116066	0.82[ASN][1000 genomes]
rs10121208	0.85[ASN][1000 genomes]
rs10739214	0.86[ASN][1000 genomes]
rs10759145	0.89[ASN][1000 genomes]
rs10759146	0.90[ASN][1000 genomes]
rs10759147	0.86[ASN][1000 genomes]
rs10816349	0.86[ASN][1000 genomes]
rs10816350	0.84[ASN][1000 genomes]
rs10978306	0.85[ASN][1000 genomes]
rs10978309	0.86[ASN][1000 genomes]
rs10978310	0.86[ASN][1000 genomes]
rs10978311	0.86[ASN][1000 genomes]
rs10978312	0.86[ASN][1000 genomes]
rs10978313	0.84[ASN][1000 genomes]
rs12346407	0.86[ASN][1000 genomes]
rs1806663	0.84[ASN][1000 genomes]
rs1806664	0.84[ASN][1000 genomes]
rs2417646	0.88[ASN][1000 genomes]
rs2417647	0.88[ASN][1000 genomes]
rs28534814	0.92[ASN][1000 genomes]
rs2997726	0.82[ASN][1000 genomes]
rs2997727	0.82[ASN][1000 genomes]
rs3010415	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3105991	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6477473	0.85[ASN][1000 genomes]
rs6477474	0.85[ASN][1000 genomes]
rs7019053	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7024988	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7030636	0.86[ASN][1000 genomes]
rs71501939	0.90[ASN][1000 genomes]
rs7854091	0.86[ASN][1000 genomes]
rs7854144	0.86[ASN][1000 genomes]
rs7862281	0.90[ASN][1000 genomes]
rs7865672	0.90[ASN][1000 genomes]
rs7869341	0.86[ASN][1000 genomes]
rs7869461	0.86[ASN][1000 genomes]
rs9299115	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893693	chr9:108427062-108683134	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv893694	chr9:108486533-108854018	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1041073	chr9:108535813-108731343	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv508558	chr9:108536115-108611087	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	n/a
5	nsv1036849	chr9:108582944-108651205	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1052684	chr9:108582944-108730280	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv615140	chr9:108592589-108725567	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv831679	chr9:108603112-108785347	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108598400-108615600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:108604800-108609400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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