Variant report

Variant	rs6477473
Chromosome Location	chr9:108603039-108603040
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:108599666..108601518-chr9:108602983..108605873,2	K562	blood:

Extended variants
information (count: 146 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:139)

rs_ID	r²[population]
rs10114077	0.86[CHB][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes]
rs10116066	0.96[ASN][1000 genomes]
rs10117187	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs10118661	0.86[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap]
rs10119128	0.81[AMR][1000 genomes]
rs10121208	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10122308	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs10156569	0.86[CHB][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes]
rs10156571	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs10217358	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10512340	0.86[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap];0.83[MEX][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes]
rs10512341	0.92[ASN][1000 genomes]
rs10739213	0.85[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs10759128	0.86[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap]
rs10759132	0.86[CHB][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes]
rs10759133	0.86[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap]
rs10759134	0.81[AMR][1000 genomes]
rs10759135	0.86[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap]
rs10759143	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10759144	0.93[ASN][1000 genomes]
rs10759145	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10759146	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10816294	0.90[JPT][hapmap];0.84[MEX][hapmap]
rs10816295	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs10816296	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs10816297	0.82[CHB][hapmap];0.90[JPT][hapmap];0.84[MEX][hapmap]
rs10816298	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs10816299	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs10816300	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs10816301	0.81[AMR][1000 genomes]
rs10816302	0.86[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes]
rs10816304	0.81[AMR][1000 genomes]
rs10816310	0.86[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes]
rs10816313	0.91[CHB][hapmap];0.83[JPT][hapmap];0.81[AMR][1000 genomes]
rs10816319	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs10816324	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs10816345	0.92[ASN][1000 genomes]
rs10816346	0.92[ASN][1000 genomes]
rs10816347	0.93[ASN][1000 genomes]
rs10978196	0.90[JPT][hapmap]
rs10978202	0.90[JPT][hapmap]
rs10978203	0.90[JPT][hapmap];0.84[MEX][hapmap]
rs10978220	0.86[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap]
rs10978226	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs10978228	0.81[AMR][1000 genomes]
rs10978230	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs10978235	0.85[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.81[YRI][hapmap];0.81[AMR][1000 genomes]
rs10978239	0.86[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap]
rs10978240	0.86[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap]
rs10978241	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs10978242	0.84[CEU][hapmap]
rs10978255	0.81[AMR][1000 genomes]
rs10978264	0.83[AMR][1000 genomes]
rs10978300	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10978301	0.92[ASN][1000 genomes]
rs10978302	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10978303	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10978306	1.00[ASN][1000 genomes]
rs11506857	0.92[ASN][1000 genomes]
rs11506858	0.92[ASN][1000 genomes]
rs11562290	0.83[AMR][1000 genomes]
rs12001759	0.81[AMR][1000 genomes]
rs12003526	0.81[AMR][1000 genomes]
rs12338851	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs12344129	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs12344225	0.83[AMR][1000 genomes]
rs12345343	0.86[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap]
rs12346407	0.98[ASN][1000 genomes]
rs12347783	0.86[CHB][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes]
rs12348107	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12348647	0.85[AMR][1000 genomes]
rs12684672	0.84[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap]
rs13286237	0.86[CHB][hapmap];0.86[JPT][hapmap];0.81[YRI][hapmap];0.81[AMR][1000 genomes]
rs1509424	0.92[ASN][1000 genomes]
rs1979992	0.86[CHB][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap]
rs1979993	0.86[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap]
rs2136407	0.81[AMR][1000 genomes]
rs2136408	0.81[AMR][1000 genomes]
rs2175121	0.86[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes]
rs2175122	0.86[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes]
rs2271246	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs2417621	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2900400	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3010415	0.86[CHB][hapmap]
rs3010964	0.85[ASN][1000 genomes]
rs3105991	0.86[CHB][hapmap]
rs35164306	0.81[AMR][1000 genomes]
rs3817141	0.86[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap];0.83[MEX][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes]
rs4292753	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4563949	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6477453	0.81[AMR][1000 genomes]
rs6477454	0.81[AMR][1000 genomes]
rs6477455	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs6477460	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs6477462	0.86[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes]
rs6477463	0.86[CHB][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes]
rs6477464	0.81[AMR][1000 genomes]
rs6477466	0.82[AMR][1000 genomes]
rs6477469	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6477470	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6477472	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6477474	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs66993159	0.82[AMR][1000 genomes]
rs7020523	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs7021727	0.81[AMR][1000 genomes]
rs7024111	0.92[ASN][1000 genomes]
rs7024357	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7024988	0.82[CHB][hapmap]
rs7026814	0.86[CHB][hapmap];0.85[JPT][hapmap];0.81[YRI][hapmap];0.81[AMR][1000 genomes]
rs7026968	0.85[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap];0.81[YRI][hapmap];0.81[AMR][1000 genomes]
rs7028906	0.82[CHB][hapmap];0.90[JPT][hapmap];0.84[MEX][hapmap]
rs7030236	0.92[ASN][1000 genomes]
rs7030399	0.81[AMR][1000 genomes]
rs7031360	0.85[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap];0.83[MEX][hapmap];0.84[YRI][hapmap];0.81[AMR][1000 genomes]
rs7031431	0.86[CHB][hapmap];0.86[JPT][hapmap];0.81[YRI][hapmap];0.81[AMR][1000 genomes]
rs7038788	0.81[AMR][1000 genomes]
rs7040532	0.81[AMR][1000 genomes]
rs7043222	0.92[ASN][1000 genomes]
rs7046212	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs7046293	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs7047678	0.90[JPT][hapmap]
rs7846853	0.81[AMR][1000 genomes]
rs7846993	0.81[AMR][1000 genomes]
rs7848176	0.81[AMR][1000 genomes]
rs7853483	0.80[AMR][1000 genomes]
rs7858663	0.81[AMR][1000 genomes]
rs7861268	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7862565	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7862921	0.82[AMR][1000 genomes]
rs7865672	0.85[CHB][hapmap];0.80[JPT][hapmap]
rs7871452	0.81[AMR][1000 genomes]
rs7872125	0.89[ASN][1000 genomes]
rs7873663	0.86[CHB][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes]
rs7874069	0.81[AMR][1000 genomes]
rs7875434	0.86[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap]
rs872245	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs872246	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9777628	0.86[CHB][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes]
rs9969715	0.85[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893693	chr9:108427062-108683134	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv893694	chr9:108486533-108854018	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1041073	chr9:108535813-108731343	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv508558	chr9:108536115-108611087	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	n/a
5	nsv1036849	chr9:108582944-108651205	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1052684	chr9:108582944-108730280	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv615140	chr9:108592589-108725567	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108598400-108615600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:108602600-108603600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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