Variant report

Variant	rs71503718
Chromosome Location	chr9:102502984-102502985
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13283239	1.00[EUR][1000 genomes]
rs34080691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34148386	1.00[EUR][1000 genomes]
rs34521590	1.00[EUR][1000 genomes]
rs34632004	1.00[AMR][1000 genomes]
rs34727728	1.00[AMR][1000 genomes]
rs34906144	1.00[EUR][1000 genomes]
rs35132689	1.00[AMR][1000 genomes]
rs35292906	0.91[EUR][1000 genomes]
rs35722336	1.00[AMR][1000 genomes]
rs35906540	1.00[AMR][1000 genomes]
rs45598240	1.00[AMR][1000 genomes]
rs71503719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71503721	1.00[EUR][1000 genomes]
rs71503722	1.00[EUR][1000 genomes]
rs71503723	1.00[EUR][1000 genomes]
rs71503728	1.00[AMR][1000 genomes]
rs73499688	1.00[EUR][1000 genomes]
rs7871215	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893621	chr9:102342950-102585545	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102500800-102504000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr9:102502000-102503000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links