Variant report

Variant	rs71503728
Chromosome Location	chr9:102767528-102767529
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:102767086..102769713-chr9:102770531..102773622,3	K562	blood:
2	chr9:102765208..102767665-chr9:102771829..102774715,3	MCF-7	breast:
3	chr9:102767086..102769925-chr9:102772122..102773628,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13283434	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13297165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34074593	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34080691	1.00[AMR][1000 genomes]
rs34359782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34632004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34727728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34891619	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35066144	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs35132689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35722336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35906540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45598240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71503718	1.00[AMR][1000 genomes]
rs71503719	1.00[AMR][1000 genomes]
rs71503724	1.00[AFR][1000 genomes]
rs71503725	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71503726	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1048674	chr9:102752236-103038259	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv968738	chr9:102760826-102768041	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv1052007	chr9:102766948-103033937	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102711400-102769200	Weak transcription	Osteobl	bone
2	chr9:102718000-102777600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr9:102729600-102826800	Weak transcription	HMEC	breast
4	chr9:102731000-102778200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr9:102752200-102768600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:102752200-102771600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr9:102757400-102790600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:102759600-102777000	Weak transcription	HUVEC	blood vessel
9	chr9:102760800-102783400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr9:102761000-102778200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr9:102762000-102790000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr9:102763400-102767800	Strong transcription	Primary T cells from cord blood	blood
13	chr9:102763400-102770000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr9:102763400-102783400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr9:102763600-102769800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr9:102763800-102767600	ZNF genes & repeats	Fetal Brain Female	brain
17	chr9:102763800-102773000	Strong transcription	Primary B cells from peripheral blood	blood
18	chr9:102764000-102767600	ZNF genes & repeats	Fetal Lung	lung
19	chr9:102764000-102767800	Strong transcription	Primary B cells from cord blood	blood
20	chr9:102764200-102773400	Weak transcription	Fetal Heart	heart
21	chr9:102764200-102783200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr9:102764600-102767600	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr9:102764600-102769600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr9:102764600-102770400	Strong transcription	Primary T helper cells PMA-I stimulated	--
25	chr9:102764600-102770400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr9:102764800-102770200	Strong transcription	Liver	Liver
27	chr9:102765000-102767800	Strong transcription	Placenta Amnion	Placenta Amnion
28	chr9:102765200-102768600	Strong transcription	Hela-S3	cervix
29	chr9:102765200-102777000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr9:102765400-102767600	Strong transcription	HepG2	liver
31	chr9:102765400-102768400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr9:102765400-102768600	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr9:102765600-102767600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr9:102765600-102767600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr9:102765600-102767600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr9:102765600-102767600	Strong transcription	Brain Inferior Temporal Lobe	brain
37	chr9:102765600-102767600	ZNF genes & repeats	Fetal Intestine Small	intestine
38	chr9:102765600-102767600	Strong transcription	Gastric	stomach
39	chr9:102765600-102767600	Strong transcription	Small Intestine	intestine
40	chr9:102765600-102768000	Strong transcription	Duodenum Mucosa	Duodenum
41	chr9:102765600-102768400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr9:102765600-102768400	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr9:102765600-102768600	Strong transcription	K562	blood
44	chr9:102765600-102769600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr9:102765600-102770200	Strong transcription	Dnd41	blood
46	chr9:102765800-102767600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr9:102765800-102767600	Strong transcription	Brain Anterior Caudate	brain
48	chr9:102765800-102767600	Strong transcription	Sigmoid Colon	Sigmoid Colon
49	chr9:102765800-102768800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr9:102766000-102767800	Strong transcription	Brain Hippocampus Middle	brain

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