Variant report

Variant	rs34359782
Chromosome Location	chr9:102839335-102839336
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13283434	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13297165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34074593	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34080691	1.00[AMR][1000 genomes]
rs34632004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34727728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34891619	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35066144	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs35132689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35722336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35906540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45598240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71503719	1.00[AMR][1000 genomes]
rs71503724	1.00[AFR][1000 genomes]
rs71503725	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71503726	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71503728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1048674	chr9:102752236-103038259	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1052007	chr9:102766948-103033937	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102767600-102845600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr9:102800000-102860200	Weak transcription	Esophagus	oesophagus
3	chr9:102805400-102844800	Weak transcription	Thymus	Thymus
4	chr9:102807400-102844800	Weak transcription	Fetal Brain Male	brain
5	chr9:102809800-102845600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr9:102810800-102845400	Weak transcription	Fetal Brain Female	brain
7	chr9:102814200-102842400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr9:102814200-102842600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr9:102818000-102842000	Weak transcription	Spleen	Spleen
10	chr9:102820200-102842800	Weak transcription	HepG2	liver
11	chr9:102820800-102846000	Weak transcription	Primary T cells from cord blood	blood
12	chr9:102821000-102845600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr9:102822000-102844000	Weak transcription	Fetal Thymus	thymus
14	chr9:102822000-102845800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr9:102822000-102849000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr9:102822400-102842600	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr9:102822400-102844000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr9:102825400-102844800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr9:102825800-102858200	Weak transcription	Fetal Intestine Small	intestine
20	chr9:102826200-102842000	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr9:102829200-102841400	Weak transcription	Left Ventricle	heart
22	chr9:102829200-102845800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr9:102829200-102850600	Weak transcription	Aorta	Aorta
24	chr9:102829400-102844800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr9:102829400-102844800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr9:102829400-102848800	Weak transcription	Duodenum Mucosa	Duodenum
27	chr9:102829400-102849200	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr9:102829400-102849600	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr9:102829400-102849800	Weak transcription	Stomach Mucosa	stomach
30	chr9:102829600-102842000	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr9:102833200-102840000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr9:102833200-102842600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr9:102833200-102842600	Weak transcription	Small Intestine	intestine
34	chr9:102833200-102845800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr9:102833800-102841000	Enhancers	K562	blood
36	chr9:102836000-102845600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr9:102836000-102859000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr9:102836400-102840000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr9:102836400-102843600	Weak transcription	Colon Smooth Muscle	Colon
40	chr9:102836600-102839400	Weak transcription	Right Atrium	heart
41	chr9:102836600-102841400	Weak transcription	GM12878-XiMat	blood
42	chr9:102836600-102842400	Weak transcription	Brain Hippocampus Middle	brain
43	chr9:102836600-102844000	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr9:102836800-102849000	Weak transcription	Fetal Lung	lung
45	chr9:102837000-102839400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr9:102837000-102849800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr9:102837000-102859600	Weak transcription	Brain Anterior Caudate	brain
48	chr9:102837200-102842800	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr9:102837200-102860200	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr9:102837400-102844800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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