Variant report

Variant	rs13283434
Chromosome Location	chr9:102820879-102820880
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13297165	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34074593	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34080691	1.00[AMR][1000 genomes]
rs34359782	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34632004	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34727728	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34891619	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35066144	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs35132689	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35722336	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35906540	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45598240	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71503719	1.00[AMR][1000 genomes]
rs71503724	0.83[AFR][1000 genomes]
rs71503725	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71503726	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71503728	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1048674	chr9:102752236-103038259	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1052007	chr9:102766948-103033937	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102729600-102826800	Weak transcription	HMEC	breast
2	chr9:102767200-102821800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr9:102767600-102826400	Weak transcription	Small Intestine	intestine
4	chr9:102767600-102845600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr9:102767800-102830000	Weak transcription	HSMMtube	muscle
6	chr9:102767800-102835600	Weak transcription	Brain Hippocampus Middle	brain
7	chr9:102788600-102825600	Weak transcription	A549	lung
8	chr9:102796400-102826000	Weak transcription	Colon Smooth Muscle	Colon
9	chr9:102796400-102828800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr9:102797400-102821000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr9:102797400-102827800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr9:102800000-102828800	Weak transcription	Aorta	Aorta
13	chr9:102800000-102828800	Weak transcription	Gastric	stomach
14	chr9:102800000-102828800	Weak transcription	Pancreas	Pancrea
15	chr9:102800000-102828800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr9:102800000-102860200	Weak transcription	Esophagus	oesophagus
17	chr9:102800200-102821200	Weak transcription	Ovary	ovary
18	chr9:102800200-102828800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr9:102800200-102836400	Weak transcription	Fetal Stomach	stomach
20	chr9:102802400-102829000	Weak transcription	Psoas Muscle	Psoas
21	chr9:102804000-102826000	Weak transcription	NHDF-Ad	bronchial
22	chr9:102805400-102844800	Weak transcription	Thymus	Thymus
23	chr9:102806000-102825600	Weak transcription	NHLF	lung
24	chr9:102806400-102823200	Weak transcription	Fetal Muscle Trunk	muscle
25	chr9:102807400-102844800	Weak transcription	Fetal Brain Male	brain
26	chr9:102808200-102825400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr9:102809600-102825000	Weak transcription	Fetal Kidney	kidney
28	chr9:102809600-102828600	Weak transcription	Brain Cingulate Gyrus	brain
29	chr9:102809600-102828600	Weak transcription	Brain Substantia Nigra	brain
30	chr9:102809800-102845600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr9:102810000-102839200	Weak transcription	Fetal Muscle Leg	muscle
32	chr9:102810400-102825400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr9:102810800-102845400	Weak transcription	Fetal Brain Female	brain
34	chr9:102811600-102825400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr9:102811800-102823400	Weak transcription	Lung	lung
36	chr9:102812600-102826800	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr9:102813800-102823600	Weak transcription	Stomach Smooth Muscle	stomach
38	chr9:102813800-102828400	Weak transcription	Brain Angular Gyrus	brain
39	chr9:102814000-102821000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr9:102814000-102825400	Weak transcription	HUVEC	blood vessel
41	chr9:102814000-102826800	Weak transcription	NHEK	skin
42	chr9:102814000-102828400	Weak transcription	Brain Anterior Caudate	brain
43	chr9:102814000-102829000	Weak transcription	Left Ventricle	heart
44	chr9:102814200-102829200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr9:102814200-102842400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr9:102814200-102842600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr9:102814400-102823000	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr9:102814400-102825600	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr9:102814600-102825400	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr9:102814600-102828600	Weak transcription	Adipose Nuclei	Adipose

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