Variant report

Variant	rs71503726
Chromosome Location	chr9:102723138-102723139
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:102722062..102723848-chr9:102724817..102727345,2	K562	blood:
2	chr9:102580898..102583358-chr9:102722487..102724133,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000237461	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13283434	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13297165	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34074593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34359782	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34632004	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34727728	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34891619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35066144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35132689	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35476201	1.00[AMR][1000 genomes]
rs35722336	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35906540	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs45598240	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71503724	1.00[AFR][1000 genomes]
rs71503725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71503728	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv831668	chr9:102568169-102747293	Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
5	nsv1050510	chr9:102684318-102748658	Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102669800-102729800	Weak transcription	Small Intestine	intestine
2	chr9:102680400-102724800	Weak transcription	HSMM	muscle
3	chr9:102682600-102751400	Weak transcription	NH-A	brain
4	chr9:102685000-102731600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr9:102685200-102730200	Weak transcription	NHLF	lung
6	chr9:102686200-102730000	Weak transcription	Colonic Mucosa	Colon
7	chr9:102686400-102723400	Weak transcription	Colon Smooth Muscle	Colon
8	chr9:102686400-102750800	Weak transcription	Esophagus	oesophagus
9	chr9:102686600-102730800	Weak transcription	Ovary	ovary
10	chr9:102686600-102750800	Weak transcription	Gastric	stomach
11	chr9:102698400-102728600	Weak transcription	HMEC	breast
12	chr9:102698400-102728800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr9:102699800-102739800	Weak transcription	K562	blood
14	chr9:102699800-102765800	Weak transcription	Psoas Muscle	Psoas
15	chr9:102700000-102728600	Weak transcription	A549	lung
16	chr9:102700600-102725000	Weak transcription	Brain Anterior Caudate	brain
17	chr9:102701000-102751000	Weak transcription	Fetal Intestine Small	intestine
18	chr9:102704600-102729200	Weak transcription	Hela-S3	cervix
19	chr9:102705000-102751200	Weak transcription	Brain Angular Gyrus	brain
20	chr9:102708400-102744000	Weak transcription	NHDF-Ad	bronchial
21	chr9:102710600-102729800	Weak transcription	Thymus	Thymus
22	chr9:102711400-102765800	Weak transcription	Right Ventricle	heart
23	chr9:102711400-102769200	Weak transcription	Osteobl	bone
24	chr9:102711600-102723200	Weak transcription	Fetal Kidney	kidney
25	chr9:102711800-102723200	Weak transcription	Stomach Smooth Muscle	stomach
26	chr9:102711800-102749000	Weak transcription	Brain Germinal Matrix	brain
27	chr9:102712000-102723200	Weak transcription	Brain Hippocampus Middle	brain
28	chr9:102712000-102728600	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr9:102712200-102732400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr9:102712200-102765600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr9:102712400-102729800	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr9:102712400-102751000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr9:102712600-102728600	Weak transcription	NHEK	skin
34	chr9:102712800-102730400	Weak transcription	Lung	lung
35	chr9:102713200-102765600	Weak transcription	HSMMtube	muscle
36	chr9:102713400-102730200	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr9:102714000-102729800	Weak transcription	Left Ventricle	heart
38	chr9:102714200-102726400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr9:102714200-102726800	Weak transcription	Rectal Smooth Muscle	rectum
40	chr9:102714200-102749200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr9:102714600-102723200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr9:102714600-102728400	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr9:102714600-102730800	Weak transcription	Dnd41	blood
44	chr9:102715800-102729800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr9:102716000-102728200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr9:102716200-102724400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr9:102717400-102723200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr9:102717400-102723200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr9:102717400-102724400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr9:102718000-102777600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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