Variant report

Variant	rs35066144
Chromosome Location	chr9:102684673-102684674
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:102679510..102681495-chr9:102684223..102687108,2	K562	blood:
2	chr9:102681063..102683683-chr9:102683801..102687863,4	MCF-7	breast:
3	chr9:102679685..102682942-chr9:102684269..102688000,3	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13283434	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs13297165	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs34074593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34359782	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs34632004	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs34727728	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs34891619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35132689	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs35476201	1.00[AMR][1000 genomes]
rs35722336	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs35906540	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs45598240	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs71503724	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs71503725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71503726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71503728	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv831668	chr9:102568169-102747293	Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
5	nsv825011	chr9:102684142-102686727	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1050510	chr9:102684318-102748658	Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102669800-102684800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:102669800-102686000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:102669800-102686200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr9:102669800-102687600	Weak transcription	Stomach Mucosa	stomach
5	chr9:102669800-102729800	Weak transcription	Small Intestine	intestine
6	chr9:102670000-102686000	Weak transcription	Psoas Muscle	Psoas
7	chr9:102670000-102688200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr9:102670400-102686000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr9:102670400-102688600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr9:102671200-102719200	Weak transcription	Fetal Heart	heart
11	chr9:102676600-102684800	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr9:102676600-102688000	Strong transcription	Primary B cells from cord blood	blood
13	chr9:102677400-102685600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:102677400-102686600	Strong transcription	Placenta	Placenta
15	chr9:102677400-102686600	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr9:102677600-102684800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr9:102677600-102685200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr9:102677600-102685800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr9:102677600-102686000	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr9:102677600-102686400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr9:102677600-102686600	Strong transcription	Fetal Intestine Large	intestine
22	chr9:102677600-102686800	Strong transcription	Liver	Liver
23	chr9:102677600-102687000	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr9:102677600-102687200	Strong transcription	Primary B cells from peripheral blood	blood
25	chr9:102677600-102687800	Strong transcription	Duodenum Smooth Muscle	Duodenum
26	chr9:102677800-102684800	Strong transcription	Fetal Thymus	thymus
27	chr9:102677800-102686600	Strong transcription	HepG2	liver
28	chr9:102677800-102687200	Strong transcription	Duodenum Mucosa	Duodenum
29	chr9:102677800-102687400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr9:102678000-102684800	Strong transcription	Hela-S3	cervix
31	chr9:102680000-102710800	Weak transcription	HUVEC	blood vessel
32	chr9:102680400-102693800	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr9:102680400-102724800	Weak transcription	HSMM	muscle
34	chr9:102680600-102685000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
35	chr9:102680600-102689000	Weak transcription	Fetal Brain Male	brain
36	chr9:102681600-102684800	Weak transcription	NHLF	lung
37	chr9:102681600-102685400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr9:102681800-102684800	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr9:102681800-102684800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr9:102681800-102684800	Weak transcription	Fetal Intestine Small	intestine
41	chr9:102681800-102684800	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr9:102681800-102684800	Weak transcription	Fetal Stomach	stomach
43	chr9:102681800-102684800	Weak transcription	Ovary	ovary
44	chr9:102681800-102685600	Weak transcription	Spleen	Spleen
45	chr9:102681800-102685800	Weak transcription	Brain Angular Gyrus	brain
46	chr9:102681800-102690400	Weak transcription	Brain Cingulate Gyrus	brain
47	chr9:102682000-102684800	Weak transcription	Brain Substantia Nigra	brain
48	chr9:102682000-102684800	Weak transcription	Thymus	Thymus
49	chr9:102682000-102685800	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr9:102682600-102686800	Strong transcription	Primary hematopoietic stem cells	blood

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