Variant report

Variant	rs71504796
Chromosome Location	chr9:21586484-21586485
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:21586444..21586977-chr9:21789496..21790440,2	MCF-7	breast:
2	chr9:21586208..21586976-chr9:21789155..21790210,3	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10757226	1.00[ASN][1000 genomes]
rs13283078	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1377192	0.86[ASN][1000 genomes]
rs1377193	0.86[ASN][1000 genomes]
rs1452653	0.86[ASN][1000 genomes]
rs1452654	0.86[ASN][1000 genomes]
rs1551919	0.95[ASN][1000 genomes]
rs1562996	0.86[ASN][1000 genomes]
rs1869207	1.00[ASN][1000 genomes]
rs4141713	0.83[ASN][1000 genomes]
rs4978124	0.86[ASN][1000 genomes]
rs6475539	1.00[ASN][1000 genomes]
rs7042262	1.00[ASN][1000 genomes]
rs7046475	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031432	chr9:21472601-21608774	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
2	nsv540085	chr9:21472601-21608774	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
3	nsv1029634	chr9:21542970-21765286	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1015623	chr9:21579110-21694039	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21575800-21592200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:21579400-21590800	Weak transcription	HSMM	muscle
3	chr9:21579600-21589400	Weak transcription	HUVEC	blood vessel
4	chr9:21580000-21594800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr9:21581400-21587000	Enhancers	Osteobl	bone
6	chr9:21583000-21586800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:21583200-21591400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:21584400-21586800	Enhancers	NHDF-Ad	bronchial
9	chr9:21584800-21589400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:21585200-21588600	Transcr. at gene 5' and 3'	A549	lung
11	chr9:21585800-21586600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:21585800-21586600	Enhancers	NHLF	lung
13	chr9:21585800-21586800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr9:21585800-21586800	Enhancers	NH-A	brain
15	chr9:21585800-21587000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:21585800-21587000	Enhancers	Hela-S3	cervix
17	chr9:21585800-21587400	Enhancers	Muscle Satellite Cultured Cells	--
18	chr9:21585800-21587400	Genic enhancers	NHEK	skin
19	chr9:21585800-21589600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr9:21586000-21586600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr9:21586000-21589400	Enhancers	HMEC	breast
22	chr9:21586200-21589400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr9:21586400-21589600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr9:21586400-21590200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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