Variant report

Variant	rs1551919
Chromosome Location	chr9:21584377-21584378
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10757226	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13283078	0.95[ASN][1000 genomes]
rs1377192	0.88[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1377193	0.91[ASN][1000 genomes]
rs1452653	0.88[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1452654	0.88[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1452660	0.93[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1542302	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1562996	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1869207	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4141713	0.87[ASN][1000 genomes]
rs4978124	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6475539	0.85[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7042262	0.95[ASN][1000 genomes]
rs7046179	0.93[AFR][1000 genomes]
rs7046475	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71504796	0.95[ASN][1000 genomes]
rs7869307	0.84[CEU][hapmap]
rs9298816	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs973422	0.95[AFR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031432	chr9:21472601-21608774	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
2	nsv540085	chr9:21472601-21608774	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
3	nsv1029634	chr9:21542970-21765286	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1015623	chr9:21579110-21694039	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21575800-21592200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:21577200-21585800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr9:21579400-21590800	Weak transcription	HSMM	muscle
4	chr9:21579600-21589400	Weak transcription	HUVEC	blood vessel
5	chr9:21579800-21585800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:21579800-21585800	Weak transcription	NH-A	brain
7	chr9:21580000-21594800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr9:21581400-21587000	Enhancers	Osteobl	bone
9	chr9:21582400-21584600	Transcr. at gene 5' and 3'	A549	lung
10	chr9:21583000-21586800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:21583200-21584400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr9:21583200-21585800	Weak transcription	NHLF	lung
13	chr9:21583200-21591400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr9:21583400-21585000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr9:21583400-21585800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr9:21583400-21585800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr9:21583400-21586000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:21583600-21585800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr9:21583800-21584800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:21583800-21586000	Weak transcription	HMEC	breast
21	chr9:21584000-21584400	Weak transcription	NHDF-Ad	bronchial
22	chr9:21584000-21585600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr9:21584000-21585800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr9:21584000-21585800	Weak transcription	NHEK	skin
25	chr9:21584200-21585000	Enhancers	Hela-S3	cervix

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