Variant report

Variant	rs7869307
Chromosome Location	chr9:21590629-21590630
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:21559603..21561116-chr9:21590002..21592420,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171889	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1452660	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1542302	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1869207	0.94[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs973422	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031432	chr9:21472601-21608774	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
2	nsv540085	chr9:21472601-21608774	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
3	nsv1029634	chr9:21542970-21765286	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1015623	chr9:21579110-21694039	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
5	nsv892742	chr9:21589041-21707372	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21575800-21592200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:21579400-21590800	Weak transcription	HSMM	muscle
3	chr9:21580000-21594800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr9:21583200-21591400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:21589000-21591000	Flanking Active TSS	Hela-S3	cervix
6	chr9:21589200-21590800	Enhancers	NHDF-Ad	bronchial
7	chr9:21589200-21591400	Flanking Active TSS	NH-A	brain
8	chr9:21589400-21591600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:21589400-21592200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
10	chr9:21589600-21590800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr9:21589600-21590800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr9:21589600-21591400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr9:21589600-21593000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr9:21590000-21590800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr9:21590000-21591000	Weak transcription	NHLF	lung
16	chr9:21590000-21591400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:21590000-21591600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr9:21590000-21592000	Active TSS	A549	lung
19	chr9:21590200-21591200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr9:21590400-21590800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr9:21590400-21590800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr9:21590400-21590800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr9:21590400-21591800	Active TSS	HMEC	breast
24	chr9:21590400-21592400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr9:21590400-21592400	Flanking Active TSS	Osteobl	bone
26	chr9:21590600-21590800	Active TSS	NHEK	skin
27	chr9:21590600-21591400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr9:21590600-21592000	Flanking Active TSS	HUVEC	blood vessel

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