Variant report

Variant	rs973422
Chromosome Location	chr9:21586334-21586335
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:21586208..21586976-chr9:21789155..21790210,3	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10757226	0.98[AFR][1000 genomes]
rs1377192	0.93[AFR][1000 genomes]
rs1452653	0.93[AFR][1000 genomes]
rs1452654	0.93[AFR][1000 genomes]
rs1452660	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1542302	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1551919	0.95[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1562996	0.98[AFR][1000 genomes]
rs1869207	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6475539	0.89[AFR][1000 genomes]
rs7046179	0.96[AFR][1000 genomes]
rs7046475	0.98[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7869307	0.94[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031432	chr9:21472601-21608774	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
2	nsv540085	chr9:21472601-21608774	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
3	nsv1029634	chr9:21542970-21765286	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1015623	chr9:21579110-21694039	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21575800-21592200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:21579400-21590800	Weak transcription	HSMM	muscle
3	chr9:21579600-21589400	Weak transcription	HUVEC	blood vessel
4	chr9:21580000-21594800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr9:21581400-21587000	Enhancers	Osteobl	bone
6	chr9:21583000-21586800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:21583200-21591400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:21584400-21586800	Enhancers	NHDF-Ad	bronchial
9	chr9:21584800-21589400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:21585200-21588600	Transcr. at gene 5' and 3'	A549	lung
11	chr9:21585600-21586400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:21585800-21586600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr9:21585800-21586600	Enhancers	NHLF	lung
14	chr9:21585800-21586800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:21585800-21586800	Enhancers	NH-A	brain
16	chr9:21585800-21587000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr9:21585800-21587000	Enhancers	Hela-S3	cervix
18	chr9:21585800-21587400	Enhancers	Muscle Satellite Cultured Cells	--
19	chr9:21585800-21587400	Genic enhancers	NHEK	skin
20	chr9:21585800-21589600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr9:21586000-21586400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:21586000-21586600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr9:21586000-21589400	Enhancers	HMEC	breast
24	chr9:21586200-21589400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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