Variant report

Variant	rs71508580
Chromosome Location	chr9:3626006-3626007
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10511449	1.00[ASN][1000 genomes]
rs10972569	1.00[ASN][1000 genomes]
rs13286602	1.00[ASN][1000 genomes]
rs13287461	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13287966	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13290753	1.00[ASN][1000 genomes]
rs13291683	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13293031	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13296366	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13296384	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13296470	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13296858	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13300511	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34126387	1.00[ASN][1000 genomes]
rs34286179	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34307533	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34423533	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34499742	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35222382	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35242480	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35884227	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66676872	1.00[ASN][1000 genomes]
rs7031679	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71508572	1.00[ASN][1000 genomes]
rs71508575	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71508577	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71508579	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71508581	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71508583	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71508584	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73389705	1.00[ASN][1000 genomes]
rs7856410	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916259	chr9:3308176-4296711	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv1022795	chr9:3436845-3744623	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
3	nsv892092	chr9:3565211-3687942	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1033417	chr9:3594189-3732530	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1021394	chr9:3594389-3728995	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1032487	chr9:3601907-3661151	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv892093	chr9:3613712-3696874	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:3606400-3640400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr9:3611600-3628000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr9:3621400-3629600	Weak transcription	Brain Substantia Nigra	brain
4	chr9:3621800-3627800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:3622600-3626200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:3624000-3626200	Weak transcription	Spleen	Spleen
7	chr9:3624000-3629800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr9:3624200-3627000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr9:3624800-3626400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr9:3625600-3626400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
11	chr9:3626000-3626800	ZNF genes & repeats	Pancreas	Pancrea
12	chr9:3626000-3629400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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