Variant report

Variant	rs34126387
Chromosome Location	chr9:3674187-3674188
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:3655163..3657660-chr9:3672402..3674386,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GLIS3-3	chr9:3674076-3674459	NONHSAT130032

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10511449	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10972569	1.00[ASN][1000 genomes]
rs10973031	1.00[EUR][1000 genomes]
rs13283774	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13285337	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13286602	1.00[ASN][1000 genomes]
rs13287461	1.00[ASN][1000 genomes]
rs13287966	1.00[ASN][1000 genomes]
rs13290753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13291683	1.00[ASN][1000 genomes]
rs13293031	1.00[ASN][1000 genomes]
rs13296366	1.00[ASN][1000 genomes]
rs13296384	1.00[ASN][1000 genomes]
rs13296470	1.00[ASN][1000 genomes]
rs13296858	1.00[ASN][1000 genomes]
rs13300511	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16919455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34286179	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34307533	1.00[ASN][1000 genomes]
rs34423533	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34499742	1.00[ASN][1000 genomes]
rs35222382	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35242480	1.00[ASN][1000 genomes]
rs35846386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35884227	1.00[ASN][1000 genomes]
rs66676872	1.00[ASN][1000 genomes]
rs7031679	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs71508572	1.00[ASN][1000 genomes]
rs71508575	1.00[ASN][1000 genomes]
rs71508577	1.00[ASN][1000 genomes]
rs71508579	1.00[ASN][1000 genomes]
rs71508580	1.00[ASN][1000 genomes]
rs71508581	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs71508583	1.00[ASN][1000 genomes]
rs71508584	1.00[ASN][1000 genomes]
rs71508588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73389705	1.00[ASN][1000 genomes]
rs7856410	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916259	chr9:3308176-4296711	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv1022795	chr9:3436845-3744623	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
3	nsv892092	chr9:3565211-3687942	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1033417	chr9:3594189-3732530	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1021394	chr9:3594389-3728995	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv892093	chr9:3613712-3696874	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
7	nsv892094	chr9:3631008-3783874	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv892095	chr9:3650174-3749196	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:3647800-3678200	Weak transcription	Psoas Muscle	Psoas
2	chr9:3659800-3676200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:3672800-3674400	Weak transcription	Left Ventricle	heart
4	chr9:3672800-3677600	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links