Variant report

Variant	rs7151
Chromosome Location	chr15:45010012-45010013
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:44953703..44956868-chr15:45007445..45011133,5	MCF-7	breast:
2	chr15:44955888..44958795-chr15:45009169..45012963,6	K562	blood:
3	chr15:44952188..44965604-chr15:45001074..45012963,51	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRIM69-2	chr15:45008015-45010343	NONHSAT042188
2	lnc-TRIM69-2	chr15:45009805-45010342	NONHSAT042186

Variant related genes	Relation type
ENSG00000104133	Chromatin interaction
ENSG00000229474	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10163110	1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10444818	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1137516	1.00[CHB][hapmap];0.83[JPT][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11634059	0.84[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11634063	0.92[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11639157	0.84[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12912870	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1630168	0.87[EUR][1000 genomes]
rs1669833	0.87[EUR][1000 genomes]
rs1690313	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16974543	0.87[EUR][1000 genomes]
rs1720723	0.87[EUR][1000 genomes]
rs1720724	0.87[EUR][1000 genomes]
rs1869125	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1901530	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1901538	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1993152	1.00[CHB][hapmap];0.91[JPT][hapmap];0.97[ASN][1000 genomes]
rs1993153	0.97[ASN][1000 genomes]
rs2084835	1.00[CHB][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs2167595	1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2468067	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2470908	1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2960206	1.00[CHB][hapmap];0.83[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3100140	0.92[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3100141	0.92[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3110677	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3759878	1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3759881	1.00[CHB][hapmap];0.83[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4923989	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs4923990	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4923991	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4923993	1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62024991	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62025968	0.81[EUR][1000 genomes]
rs62025969	0.84[EUR][1000 genomes]
rs6416439	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6416440	0.82[CHB][hapmap];0.83[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6493110	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6493111	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6493112	0.97[ASN][1000 genomes]
rs6493114	1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6493116	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6493118	1.00[CHB][hapmap];0.83[JPT][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6493119	1.00[CHB][hapmap];0.83[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6493124	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6493125	1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6493126	0.81[EUR][1000 genomes]
rs6493127	0.87[EUR][1000 genomes]
rs6493128	0.81[EUR][1000 genomes]
rs7165535	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7168090	0.91[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7172357	0.81[EUR][1000 genomes]
rs7172376	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7496437	1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7496559	0.87[EUR][1000 genomes]
rs7497862	0.81[ASN][1000 genomes]
rs8035787	1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8036223	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8038532	0.84[EUR][1000 genomes]
rs935885	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs935888	1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs935889	0.92[CHB][hapmap];0.83[JPT][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3386433	chr15:44654644-45037538	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases
2	esv2758380	chr15:44968868-45422842	Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
3	esv2760029	chr15:44968868-45422842	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
4	nsv832990	chr15:44990765-45162714	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45003200-45011600	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
2	chr15:45003800-45010600	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
3	chr15:45004200-45012400	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
4	chr15:45004600-45020600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:45005000-45018400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr15:45005000-45018600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr15:45005200-45011400	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
8	chr15:45005400-45010200	Weak transcription	Brain Germinal Matrix	brain
9	chr15:45006000-45012200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr15:45006600-45011200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr15:45006600-45011200	Strong transcription	HSMM	muscle
12	chr15:45006800-45012000	Strong transcription	Osteobl	bone
13	chr15:45007000-45010600	Strong transcription	K562	blood
14	chr15:45007000-45010800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr15:45007000-45011200	Strong transcription	Fetal Muscle Trunk	muscle
16	chr15:45007000-45011400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr15:45007000-45011400	Strong transcription	HUVEC	blood vessel
18	chr15:45007000-45011600	Strong transcription	NH-A	brain
19	chr15:45007200-45010800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:45007200-45011200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr15:45007200-45011200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr15:45007200-45011400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr15:45007200-45011600	Genic enhancers	Primary monocytes fromperipheralblood	blood
24	chr15:45007200-45011600	Strong transcription	HSMMtube	muscle
25	chr15:45007200-45012000	Strong transcription	Muscle Satellite Cultured Cells	--
26	chr15:45007400-45010800	Strong transcription	Gastric	stomach
27	chr15:45007400-45011000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr15:45007400-45011200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr15:45007400-45011200	Strong transcription	Cortex derived primary cultured neurospheres	brain
30	chr15:45007400-45011400	Strong transcription	Placenta	Placenta
31	chr15:45007400-45011600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr15:45007400-45012000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr15:45007400-45012600	Strong transcription	Fetal Muscle Leg	muscle
34	chr15:45007600-45010200	Genic enhancers	Duodenum Mucosa	Duodenum
35	chr15:45007600-45010200	Strong transcription	Fetal Kidney	kidney
36	chr15:45007600-45010400	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr15:45007600-45010400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr15:45007600-45010600	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr15:45007600-45010600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr15:45007600-45011000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr15:45007600-45011000	Strong transcription	Placenta Amnion	Placenta Amnion
42	chr15:45007600-45011000	Strong transcription	Stomach Smooth Muscle	stomach
43	chr15:45007600-45011200	Strong transcription	HMEC	breast
44	chr15:45007600-45011800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr15:45007600-45011800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr15:45007800-45010200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
47	chr15:45007800-45010200	Strong transcription	Brain Inferior Temporal Lobe	brain
48	chr15:45007800-45010600	Strong transcription	Brain Cingulate Gyrus	brain
49	chr15:45007800-45010600	Strong transcription	Hela-S3	cervix
50	chr15:45007800-45010800	Strong transcription	Ovary	ovary

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