Variant report

Variant	rs8035787
Chromosome Location	chr15:45022915-45022916
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:44953583..44958025-chr15:45017998..45023674,11	MCF-7	breast:
2	chr15:45002519..45006188-chr15:45021478..45023982,4	MCF-7	breast:
3	chr15:44952092..44957540-chr15:45017481..45022918,18	K562	blood:
4	chr15:45022234..45024194-chr15:45049585..45052010,2	K562	blood:
5	chr15:45000863..45005844-chr15:45018710..45023352,9	MCF-7	breast:
6	chr15:45021620..45024215-chr15:45028618..45030291,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166710	Chromatin interaction
ENSG00000104133	Chromatin interaction
ENSG00000185880	Chromatin interaction
ENSG00000229474	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10163110	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10444818	0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1137516	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11634059	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11634063	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11639157	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12912870	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1630168	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1669833	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1690313	0.82[CHB][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16974543	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1720723	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1720724	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1869125	0.83[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1901530	0.82[CHB][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1901538	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1993152	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1993153	0.99[ASN][1000 genomes]
rs2084835	1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs2167595	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2468067	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2470908	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2960206	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3100140	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3100141	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3110677	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3759878	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3759881	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4923989	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs4923990	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4923991	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4923993	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62024991	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62025968	0.94[EUR][1000 genomes]
rs62025969	0.91[EUR][1000 genomes]
rs6416439	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6416440	1.00[CEU][hapmap];0.82[CHB][hapmap];0.92[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6493110	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6493111	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6493112	0.99[ASN][1000 genomes]
rs6493114	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6493116	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6493118	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6493119	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6493124	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6493125	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6493126	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6493127	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs6493128	0.94[EUR][1000 genomes]
rs7151	1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7165535	1.00[CHB][hapmap];0.91[JPT][hapmap];0.97[ASN][1000 genomes]
rs7168090	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7172357	0.94[EUR][1000 genomes]
rs7172376	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7496437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7496559	0.87[EUR][1000 genomes]
rs7497862	0.83[ASN][1000 genomes]
rs8036223	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8038532	0.91[EUR][1000 genomes]
rs935885	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs935888	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs935889	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3386433	chr15:44654644-45037538	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases
2	esv2758380	chr15:44968868-45422842	Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
3	esv2760029	chr15:44968868-45422842	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
4	nsv832990	chr15:44990765-45162714	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45020200-45023000	Active TSS	Brain Anterior Caudate	brain
2	chr15:45020400-45023600	Active TSS	GM12878-XiMat	blood
3	chr15:45020600-45023000	Active TSS	Brain Angular Gyrus	brain
4	chr15:45020600-45023000	Active TSS	Brain Cingulate Gyrus	brain
5	chr15:45020600-45023000	Active TSS	Brain Hippocampus Middle	brain
6	chr15:45020600-45023000	Active TSS	Brain Inferior Temporal Lobe	brain
7	chr15:45020600-45023000	Active TSS	Duodenum Smooth Muscle	Duodenum
8	chr15:45020600-45023000	Active TSS	Right Atrium	heart
9	chr15:45020600-45023000	Active TSS	Right Ventricle	heart
10	chr15:45020600-45023000	Active TSS	NHLF	lung
11	chr15:45020800-45023000	Active TSS	Duodenum Mucosa	Duodenum
12	chr15:45021200-45023000	Flanking Active TSS	Primary B cells from cord blood	blood
13	chr15:45021600-45023400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
14	chr15:45021800-45023800	Weak transcription	Gastric	stomach
15	chr15:45022000-45023000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
16	chr15:45022000-45023000	Flanking Active TSS	Hela-S3	cervix
17	chr15:45022000-45023200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
18	chr15:45022000-45023200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
19	chr15:45022000-45023400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr15:45022000-45023800	Weak transcription	Spleen	Spleen
21	chr15:45022000-45024400	Weak transcription	Pancreas	Pancrea
22	chr15:45022000-45024600	Weak transcription	Esophagus	oesophagus
23	chr15:45022200-45023000	Enhancers	Fetal Lung	lung
24	chr15:45022200-45023000	Weak transcription	Small Intestine	intestine
25	chr15:45022200-45023200	Enhancers	Fetal Intestine Small	intestine
26	chr15:45022200-45023400	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
27	chr15:45022200-45023600	Weak transcription	Fetal Muscle Trunk	muscle
28	chr15:45022200-45023600	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr15:45022200-45023600	Weak transcription	HSMMtube	muscle
30	chr15:45022200-45023800	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr15:45022200-45023800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr15:45022200-45023800	Weak transcription	Lung	lung
33	chr15:45022200-45023800	Weak transcription	Ovary	ovary
34	chr15:45022200-45027200	Weak transcription	Aorta	Aorta
35	chr15:45022200-45027600	Weak transcription	Colonic Mucosa	Colon
36	chr15:45022200-45027800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr15:45022200-45027800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr15:45022400-45023000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr15:45022400-45023000	Enhancers	Brain Substantia Nigra	brain
40	chr15:45022400-45023000	Enhancers	Rectal Mucosa Donor 31	rectum
41	chr15:45022400-45023000	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr15:45022400-45023200	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr15:45022400-45023400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
44	chr15:45022400-45023400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr15:45022400-45023600	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr15:45022400-45023600	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr15:45022400-45023600	Weak transcription	HMEC	breast
48	chr15:45022400-45023600	Weak transcription	HSMM	muscle
49	chr15:45022400-45023800	Enhancers	Primary B cells from peripheral blood	blood
50	chr15:45022400-45023800	Weak transcription	Fetal Stomach	stomach

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