Variant report

Variant	rs7152152
Chromosome Location	chr14:68906285-68906286
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11158742	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12588330	0.95[GIH][hapmap]
rs12590319	0.83[ASN][1000 genomes]
rs12897307	1.00[JPT][hapmap]
rs1570107	0.82[LWK][hapmap]
rs2331703	0.97[GIH][hapmap]
rs2331704	0.97[GIH][hapmap]
rs4899241	0.85[GIH][hapmap]
rs4902580	0.95[GIH][hapmap]
rs8019592	0.83[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68895200-68914400	Weak transcription	A549	lung
2	chr14:68901400-68908600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr14:68901800-68907400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr14:68903000-68911200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr14:68903600-68907200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr14:68904000-68910000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr14:68905200-68906800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr14:68905600-68906800	Enhancers	Fetal Muscle Leg	muscle
9	chr14:68906000-68906400	Weak transcription	Colon Smooth Muscle	Colon
10	chr14:68906000-68907000	Enhancers	Fetal Heart	heart
11	chr14:68906200-68906400	Enhancers	Fetal Lung	lung
12	chr14:68906200-68906600	Enhancers	Psoas Muscle	Psoas
13	chr14:68906200-68906600	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr14:68906200-68907000	Enhancers	Adipose Nuclei	Adipose
15	chr14:68906200-68907000	Enhancers	Stomach Smooth Muscle	stomach
16	chr14:68906200-68911200	Weak transcription	Spleen	Spleen
17	chr14:68906200-68911400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr14:68906200-68912200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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