Variant report

Variant	rs1570107
Chromosome Location	chr14:68904059-68904060
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68903088..68905318-chr14:68921062..68923121,2	MCF-7	breast:
2	chr14:68902379..68904838-chr14:68925274..68927509,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10130623	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10131303	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10133531	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10135443	1.00[ASN][1000 genomes]
rs10142381	0.91[ASN][1000 genomes]
rs10144394	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10145082	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10145446	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10149278	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10151245	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11625077	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11626013	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11626015	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11846851	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17105494	1.00[GIH][hapmap]
rs17105501	1.00[GIH][hapmap]
rs17105545	0.85[CHD][hapmap];1.00[GIH][hapmap]
rs17105601	0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs17105664	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17105901	1.00[MEX][hapmap]
rs28376370	0.83[ASN][1000 genomes]
rs28655994	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3784127	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs60145217	0.91[ASN][1000 genomes]
rs7142184	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7152152	0.82[LWK][hapmap]
rs73276276	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7359118	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9743605	0.82[AMR][1000 genomes]
rs9743886	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv14631	chr14:68901815-68906031	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv525928	chr14:68904059-68905974	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68895200-68914400	Weak transcription	A549	lung
2	chr14:68901400-68908600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr14:68901800-68907400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr14:68903000-68911200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr14:68903600-68907200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr14:68904000-68910000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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