Variant report

Variant	rs28376370
Chromosome Location	chr14:68943161-68943162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68942896..68944476-chr14:69282297..69284211,2	MCF-7	breast:
2	chr14:68941663..68944828-chr14:69250861..69253636,3	MCF-7	breast:
3	chr14:68938156..68939886-chr14:68942575..68944158,2	K562	blood:
4	chr14:68720467..68722862-chr14:68941534..68943401,3	MCF-7	breast:
5	chr14:68862987..68864595-chr14:68942546..68944061,2	MCF-7	breast:
6	chr14:68930492..68947840-chr14:69251918..69264148,62	MCF-7	breast:
7	chr14:68941036..68943975-chr14:68946841..68948622,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182185	Chromatin interaction
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10133531	0.83[ASN][1000 genomes]
rs10135443	0.83[ASN][1000 genomes]
rs10142381	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10144394	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10145082	0.83[ASN][1000 genomes]
rs10145446	0.83[ASN][1000 genomes]
rs10149278	0.88[ASN][1000 genomes]
rs10151245	0.83[ASN][1000 genomes]
rs11622203	1.00[EUR][1000 genomes]
rs11625077	0.83[ASN][1000 genomes]
rs11626013	0.83[ASN][1000 genomes]
rs11626015	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11846851	0.83[ASN][1000 genomes]
rs12323677	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1570107	0.83[ASN][1000 genomes]
rs17105664	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28655994	0.83[ASN][1000 genomes]
rs3784127	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60145217	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7142184	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68927600-68943800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr14:68928600-68949000	Weak transcription	Thymus	Thymus
3	chr14:68932200-68950000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr14:68933000-68946600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr14:68933400-68943400	Weak transcription	Left Ventricle	heart
6	chr14:68933600-68950600	Weak transcription	Aorta	Aorta
7	chr14:68934200-68946200	Enhancers	Primary B cells from peripheral blood	blood
8	chr14:68935400-68943400	Weak transcription	Fetal Thymus	thymus
9	chr14:68935800-68943200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr14:68935800-68943400	Weak transcription	Gastric	stomach
11	chr14:68936000-68943600	Weak transcription	Brain Hippocampus Middle	brain
12	chr14:68936000-68943600	Weak transcription	Esophagus	oesophagus
13	chr14:68936000-68947600	Weak transcription	Primary T cells from cord blood	blood
14	chr14:68936200-68943600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr14:68936200-68943600	Weak transcription	Brain Anterior Caudate	brain
16	chr14:68936800-68943400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr14:68936800-68944800	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr14:68938800-68944200	Enhancers	Liver	Liver
19	chr14:68939000-68943400	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr14:68939000-68947400	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr14:68939000-68951600	Weak transcription	Primary hematopoietic stem cells	blood
22	chr14:68939200-68943400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr14:68939200-68943400	Weak transcription	Lung	lung
24	chr14:68939600-68943600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr14:68940000-68943400	Weak transcription	Colon Smooth Muscle	Colon
26	chr14:68940200-68943200	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr14:68940200-68943200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr14:68940200-68943200	Weak transcription	Fetal Kidney	kidney
29	chr14:68940200-68943200	Weak transcription	Pancreas	Pancrea
30	chr14:68940200-68943200	Weak transcription	Stomach Smooth Muscle	stomach
31	chr14:68940200-68943400	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr14:68940200-68943400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr14:68940200-68943600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr14:68940200-68943600	Weak transcription	Psoas Muscle	Psoas
35	chr14:68940200-68943600	Weak transcription	Right Ventricle	heart
36	chr14:68940200-68943800	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr14:68940200-68943800	Weak transcription	Fetal Stomach	stomach
38	chr14:68940200-68943800	Weak transcription	Spleen	Spleen
39	chr14:68940200-68949400	Weak transcription	Fetal Lung	lung
40	chr14:68940400-68943200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr14:68941000-68944600	Enhancers	Fetal Intestine Large	intestine
42	chr14:68941200-68944400	Enhancers	NHEK	skin
43	chr14:68941200-68946400	Enhancers	HMEC	breast
44	chr14:68941600-68944200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr14:68941600-68945600	Enhancers	iPS-20b Cell Line	embryonic stem cell
46	chr14:68941800-68943200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr14:68941800-68944000	Enhancers	HepG2	liver
48	chr14:68941800-68944600	Enhancers	iPS-15b Cell Line	embryonic stem cell
49	chr14:68942000-68944800	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr14:68942000-68945400	Enhancers	Primary B cells from cord blood	blood

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