Variant report

Variant	rs10142381
Chromosome Location	chr14:68916998-68916999
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68916802..68919938-chr14:68924497..68927794,5	MCF-7	breast:
2	chr14:68912559..68915110-chr14:68915133..68917933,3	MCF-7	breast:
3	chr14:68914099..68917436-chr14:68918441..68922631,3	K562	blood:
4	chr14:68915233..68917700-chr14:69258123..69259734,2	K562	blood:
5	chr14:68916102..68918734-chr14:69031708..69033392,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10130623	0.88[ASN][1000 genomes]
rs10131303	0.88[ASN][1000 genomes]
rs10133531	0.91[ASN][1000 genomes]
rs10135443	0.91[ASN][1000 genomes]
rs10144394	0.98[AFR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10145082	0.91[ASN][1000 genomes]
rs10145446	0.91[ASN][1000 genomes]
rs10149278	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10151245	0.91[ASN][1000 genomes]
rs11622203	0.86[EUR][1000 genomes]
rs11625077	0.91[ASN][1000 genomes]
rs11626013	0.91[ASN][1000 genomes]
rs11626015	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11846851	0.91[ASN][1000 genomes]
rs12323677	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1570107	0.91[ASN][1000 genomes]
rs17105664	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28376370	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28655994	0.91[ASN][1000 genomes]
rs3784127	0.96[AFR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60145217	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7142184	0.91[ASN][1000 genomes]
rs73276276	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68908600-68917400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr14:68911800-68917200	Weak transcription	Right Atrium	heart
3	chr14:68911800-68917600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr14:68911800-68921200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr14:68912000-68917600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr14:68912000-68917600	Weak transcription	Left Ventricle	heart
7	chr14:68912000-68917600	Weak transcription	Psoas Muscle	Psoas
8	chr14:68912200-68917200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr14:68912200-68917600	Weak transcription	Osteobl	bone
10	chr14:68914000-68917800	Enhancers	Rectal Smooth Muscle	rectum
11	chr14:68914000-68918400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr14:68914200-68918600	Enhancers	Colon Smooth Muscle	Colon
13	chr14:68914400-68917000	Enhancers	A549	lung
14	chr14:68914400-68918800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr14:68914400-68919000	Enhancers	Fetal Stomach	stomach
16	chr14:68914600-68917800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr14:68914800-68918400	Weak transcription	Fetal Intestine Large	intestine
18	chr14:68915000-68918600	Enhancers	H1 Cell Line	embryonic stem cell
19	chr14:68915200-68917000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr14:68915200-68917200	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr14:68915400-68924800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr14:68915600-68925400	Weak transcription	Colonic Mucosa	Colon
23	chr14:68915800-68917600	Enhancers	Dnd41	blood
24	chr14:68915800-68918200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr14:68916000-68917000	Enhancers	Fetal Thymus	thymus
26	chr14:68916000-68917000	Enhancers	GM12878-XiMat	blood
27	chr14:68916000-68917000	Enhancers	NHDF-Ad	bronchial
28	chr14:68916000-68919400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr14:68916000-68919600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr14:68916200-68917000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr14:68916200-68917000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr14:68916200-68917000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr14:68916200-68917400	Enhancers	Primary B cells from peripheral blood	blood
34	chr14:68916200-68917800	Enhancers	Fetal Muscle Trunk	muscle
35	chr14:68916200-68917800	Enhancers	Placenta	Placenta
36	chr14:68916200-68918800	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr14:68916200-68918800	Enhancers	Adipose Nuclei	Adipose
38	chr14:68916200-68919000	Enhancers	Fetal Muscle Leg	muscle
39	chr14:68916200-68919200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr14:68916400-68917200	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr14:68916400-68917600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr14:68916400-68917800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr14:68916400-68918200	Weak transcription	Liver	Liver
44	chr14:68916600-68917000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr14:68916600-68917600	Weak transcription	Ovary	ovary
46	chr14:68916600-68917600	Weak transcription	Stomach Smooth Muscle	stomach
47	chr14:68916600-68918200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr14:68916600-68918200	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr14:68916600-68918600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr14:68916600-68918600	Enhancers	HUES6 Cell Line	embryonic stem cell

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