Variant report

Variant	rs11622203
Chromosome Location	chr14:68944623-68944624
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68941663..68944828-chr14:69250861..69253636,3	MCF-7	breast:
2	chr14:68943541..68946317-chr14:68952367..68953897,2	MCF-7	breast:
3	chr14:68930492..68947840-chr14:69251918..69264148,62	MCF-7	breast:
4	chr14:68943293..68946100-chr14:69042850..69045174,2	MCF-7	breast:
5	chr14:68943428..68945388-chr14:69016683..69019444,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-EXD2-7	chr14:68944365-68944818	NONHSAT037483

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10142381	0.86[EUR][1000 genomes]
rs10144394	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10149278	1.00[CEU][hapmap]
rs11626015	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11850581	1.00[CEU][hapmap]
rs12323677	0.95[EUR][1000 genomes]
rs17105573	1.00[CEU][hapmap]
rs17105664	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs28376370	1.00[EUR][1000 genomes]
rs3784127	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs60145217	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68928600-68949000	Weak transcription	Thymus	Thymus
2	chr14:68932200-68950000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr14:68933000-68946600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr14:68933600-68950600	Weak transcription	Aorta	Aorta
5	chr14:68934200-68946200	Enhancers	Primary B cells from peripheral blood	blood
6	chr14:68936000-68947600	Weak transcription	Primary T cells from cord blood	blood
7	chr14:68936800-68944800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr14:68939000-68947400	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr14:68939000-68951600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr14:68940200-68949400	Weak transcription	Fetal Lung	lung
11	chr14:68941200-68946400	Enhancers	HMEC	breast
12	chr14:68941600-68945600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr14:68942000-68944800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr14:68942000-68945400	Enhancers	Primary B cells from cord blood	blood
15	chr14:68942200-68944800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr14:68942400-68945200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr14:68942400-68945200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr14:68942400-68945800	Weak transcription	Fetal Intestine Small	intestine
19	chr14:68942600-68944800	Enhancers	Adipose Nuclei	Adipose
20	chr14:68942600-68945400	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr14:68942600-68945600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr14:68942600-68946000	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr14:68942600-68946600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr14:68942800-68945400	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr14:68943000-68945000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr14:68943000-68947200	Enhancers	Placenta Amnion	Placenta Amnion
27	chr14:68943200-68944800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr14:68943200-68944800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr14:68943200-68945200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr14:68943200-68946800	Enhancers	Pancreas	Pancrea
31	chr14:68943200-68949000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr14:68943400-68944800	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr14:68943400-68945200	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr14:68943400-68951600	Enhancers	Placenta	Placenta
35	chr14:68943600-68949600	Weak transcription	Fetal Kidney	kidney
36	chr14:68943800-68944800	Enhancers	NHDF-Ad	bronchial
37	chr14:68943800-68945000	Enhancers	Muscle Satellite Cultured Cells	--
38	chr14:68943800-68945000	Enhancers	Fetal Muscle Trunk	muscle
39	chr14:68943800-68949000	Weak transcription	Colon Smooth Muscle	Colon
40	chr14:68943800-68950000	Weak transcription	Fetal Heart	heart
41	chr14:68943800-68957400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr14:68944000-68945200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr14:68944000-68945200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr14:68944000-68945400	Weak transcription	K562	blood
45	chr14:68944000-68945800	Weak transcription	HepG2	liver
46	chr14:68944000-68949200	Weak transcription	Stomach Smooth Muscle	stomach
47	chr14:68944000-68950200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr14:68944000-68950400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr14:68944000-68959200	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr14:68944200-68945000	Enhancers	Monocytes-CD14+_RO01746	blood

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