Variant report

Variant	rs11850581
Chromosome Location	chr14:68890327-68890328
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10144394	1.00[CEU][hapmap]
rs10149278	1.00[CEU][hapmap]
rs11622203	1.00[CEU][hapmap]
rs11626015	1.00[CEU][hapmap]
rs17105573	1.00[CEU][hapmap];0.89[YRI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17105664	1.00[CEU][hapmap]
rs17755657	0.89[YRI][hapmap]
rs28669317	1.00[ASN][1000 genomes]
rs3784127	1.00[CEU][hapmap]
rs7159945	1.00[ASN][1000 genomes]
rs73276270	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73276280	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68877200-68890600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr14:68881000-68890600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr14:68882400-68893400	Weak transcription	Fetal Intestine Small	intestine
4	chr14:68884200-68890800	Weak transcription	Colon Smooth Muscle	Colon
5	chr14:68885200-68893600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:68886000-68890600	Weak transcription	Fetal Muscle Leg	muscle
7	chr14:68886200-68894800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr14:68886600-68903200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr14:68887800-68890600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr14:68887800-68890800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr14:68888000-68891000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr14:68888000-68893400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr14:68888000-68901000	Weak transcription	Primary T cells from cord blood	blood
14	chr14:68888200-68891800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr14:68888200-68892600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr14:68888200-68893200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr14:68888800-68893600	Weak transcription	Lung	lung
18	chr14:68889000-68893600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr14:68890000-68891000	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr14:68890000-68891000	Enhancers	Primary B cells from peripheral blood	blood
21	chr14:68890200-68891000	Enhancers	Primary B cells from cord blood	blood
22	chr14:68890200-68891400	Enhancers	Monocytes-CD14+_RO01746	blood

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