Variant report

Variant	rs17105573
Chromosome Location	chr14:68878760-68878761
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68878300..68881493-chr14:69259065..69264364,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10129349	1.00[MEX][hapmap]
rs10133531	1.00[MEX][hapmap]
rs10144394	1.00[CEU][hapmap]
rs10149278	1.00[CEU][hapmap]
rs11622203	1.00[CEU][hapmap]
rs11626015	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs11850581	1.00[CEU][hapmap];0.89[YRI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12889770	0.87[MKK][hapmap]
rs17105664	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs17755657	0.83[LWK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs28669317	1.00[ASN][1000 genomes]
rs3784127	1.00[CEU][hapmap]
rs7159945	1.00[ASN][1000 genomes]
rs73276270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73276280	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68867200-68886400	Weak transcription	Dnd41	blood
2	chr14:68868200-68887200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr14:68871800-68879000	Weak transcription	NH-A	brain
4	chr14:68871800-68880800	Weak transcription	Fetal Lung	lung
5	chr14:68872200-68883400	Weak transcription	Esophagus	oesophagus
6	chr14:68872800-68879400	Weak transcription	HUVEC	blood vessel
7	chr14:68873400-68878800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr14:68873400-68878800	Weak transcription	NHEK	skin
9	chr14:68873400-68883800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr14:68874200-68879200	Enhancers	A549	lung
11	chr14:68874600-68879000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr14:68874800-68880400	Weak transcription	Small Intestine	intestine
13	chr14:68875000-68879400	Weak transcription	Stomach Mucosa	stomach
14	chr14:68875000-68883800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr14:68875000-68883800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr14:68875200-68879200	Weak transcription	Fetal Intestine Large	intestine
17	chr14:68875400-68879200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr14:68875400-68879200	Weak transcription	Fetal Intestine Small	intestine
19	chr14:68875400-68881400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr14:68875400-68884200	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr14:68876000-68878800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr14:68876000-68880000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr14:68876200-68879800	Weak transcription	Primary hematopoietic stem cells	blood
24	chr14:68876400-68879000	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr14:68876400-68879400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr14:68876400-68880800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr14:68876400-68882000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr14:68876600-68879200	Weak transcription	Osteobl	bone
29	chr14:68876600-68879600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr14:68876800-68878800	Weak transcription	NHDF-Ad	bronchial
31	chr14:68876800-68879000	Weak transcription	NHLF	lung
32	chr14:68877000-68879000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr14:68877000-68880400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr14:68877000-68885600	Weak transcription	Primary T cells from cord blood	blood
35	chr14:68877000-68886000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr14:68877200-68879000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr14:68877200-68881800	Weak transcription	Primary B cells from peripheral blood	blood
38	chr14:68877200-68890600	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr14:68877400-68880400	Weak transcription	Ovary	ovary
40	chr14:68877400-68881200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr14:68877400-68881800	Weak transcription	Fetal Muscle Leg	muscle
42	chr14:68877400-68882000	Weak transcription	Pancreas	Pancrea
43	chr14:68877400-68882800	Weak transcription	Primary B cells from cord blood	blood
44	chr14:68877400-68885200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr14:68878600-68880200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr14:68878600-68880400	Enhancers	HMEC	breast

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