Variant report

Variant	rs73276270
Chromosome Location	chr14:68880840-68880841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68878300..68881493-chr14:69259065..69264364,5	MCF-7	breast:
2	chr14:68876335..68878729-chr14:68880781..68883526,2	MCF-7	breast:
3	chr14:68879521..68881175-chr14:69256240..69258529,2	MCF-7	breast:
4	chr14:68878806..68882787-chr14:68883968..68886756,5	MCF-7	breast:
5	chr14:68656816..68658573-chr14:68879129..68882027,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182185	Chromatin interaction
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11850581	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17105573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17755657	0.88[AFR][1000 genomes]
rs28669317	1.00[ASN][1000 genomes]
rs7159945	1.00[ASN][1000 genomes]
rs73276280	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68867200-68886400	Weak transcription	Dnd41	blood
2	chr14:68868200-68887200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr14:68872200-68883400	Weak transcription	Esophagus	oesophagus
4	chr14:68873400-68883800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr14:68875000-68883800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr14:68875000-68883800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr14:68875400-68881400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr14:68875400-68884200	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr14:68876400-68882000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr14:68877000-68885600	Weak transcription	Primary T cells from cord blood	blood
11	chr14:68877000-68886000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr14:68877200-68881800	Weak transcription	Primary B cells from peripheral blood	blood
13	chr14:68877200-68890600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr14:68877400-68881200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr14:68877400-68881800	Weak transcription	Fetal Muscle Leg	muscle
16	chr14:68877400-68882000	Weak transcription	Pancreas	Pancrea
17	chr14:68877400-68882800	Weak transcription	Primary B cells from cord blood	blood
18	chr14:68877400-68885200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr14:68879000-68881400	Enhancers	Hela-S3	cervix
20	chr14:68879200-68881400	Enhancers	Fetal Intestine Large	intestine
21	chr14:68879200-68882400	Enhancers	Fetal Intestine Small	intestine
22	chr14:68879400-68881000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr14:68879400-68881000	Enhancers	K562	blood
24	chr14:68879400-68882600	Enhancers	Stomach Mucosa	stomach
25	chr14:68879800-68881000	Enhancers	Primary hematopoietic stem cells	blood
26	chr14:68880000-68885000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr14:68880200-68882400	Enhancers	A549	lung
28	chr14:68880200-68885000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr14:68880200-68885000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr14:68880200-68885000	Weak transcription	NHEK	skin
31	chr14:68880400-68881400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr14:68880400-68881600	Enhancers	Small Intestine	intestine
33	chr14:68880400-68882400	Enhancers	Ovary	ovary
34	chr14:68880400-68884200	Enhancers	Colon Smooth Muscle	Colon
35	chr14:68880400-68885000	Weak transcription	HMEC	breast
36	chr14:68880600-68884200	Enhancers	Fetal Stomach	stomach
37	chr14:68880800-68881200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr14:68880800-68883000	Weak transcription	Fetal Kidney	kidney
39	chr14:68880800-68885800	Enhancers	Fetal Lung	lung

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