Variant report

Variant	rs3784127
Chromosome Location	chr14:68939207-68939208
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68774341..68775925-chr14:68938870..68941254,2	MCF-7	breast:
2	chr14:68930492..68947840-chr14:69251918..69264148,62	MCF-7	breast:
3	chr14:68939074..68942142-chr14:68974708..68977098,3	MCF-7	breast:
4	chr14:68939193..68941696-chr14:68948813..68950407,2	K562	blood:
5	chr14:68931847..68934865-chr14:68939017..68942648,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10130623	0.96[ASN][1000 genomes]
rs10131303	0.82[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10133531	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.83[ASN][1000 genomes]
rs10135443	0.91[ASN][1000 genomes]
rs10142381	0.96[AFR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10144394	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10145082	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.83[ASN][1000 genomes]
rs10145446	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10149278	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10151245	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11622203	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11625077	0.91[ASN][1000 genomes]
rs11626013	0.91[ASN][1000 genomes]
rs11626015	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11846851	0.91[ASN][1000 genomes]
rs11850581	1.00[CEU][hapmap]
rs12323677	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1570107	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17105573	1.00[CEU][hapmap]
rs17105601	0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17105664	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28376370	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28655994	0.91[ASN][1000 genomes]
rs60145217	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7142184	0.91[ASN][1000 genomes]
rs73276276	0.88[ASN][1000 genomes]
rs7359118	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68926200-68940000	Weak transcription	Ovary	ovary
2	chr14:68927600-68943800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr14:68928400-68939400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr14:68928600-68949000	Weak transcription	Thymus	Thymus
5	chr14:68932200-68950000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr14:68933000-68946600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr14:68933400-68943000	Weak transcription	Right Atrium	heart
8	chr14:68933400-68943400	Weak transcription	Left Ventricle	heart
9	chr14:68933600-68939800	Weak transcription	Fetal Stomach	stomach
10	chr14:68933600-68942800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr14:68933600-68950600	Weak transcription	Aorta	Aorta
12	chr14:68933800-68942600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr14:68934200-68946200	Enhancers	Primary B cells from peripheral blood	blood
14	chr14:68934400-68939800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr14:68934800-68940200	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr14:68935000-68940400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr14:68935200-68940200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr14:68935200-68940200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr14:68935400-68940200	Enhancers	H1 Cell Line	embryonic stem cell
20	chr14:68935400-68940200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr14:68935400-68940200	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr14:68935400-68940800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr14:68935400-68943400	Weak transcription	Fetal Thymus	thymus
24	chr14:68935600-68940200	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr14:68935800-68940800	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr14:68935800-68943200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr14:68935800-68943400	Weak transcription	Gastric	stomach
28	chr14:68936000-68940000	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr14:68936000-68942600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr14:68936000-68942800	Weak transcription	HSMM	muscle
31	chr14:68936000-68943600	Weak transcription	Brain Hippocampus Middle	brain
32	chr14:68936000-68943600	Weak transcription	Esophagus	oesophagus
33	chr14:68936000-68947600	Weak transcription	Primary T cells from cord blood	blood
34	chr14:68936200-68941200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr14:68936200-68942800	Weak transcription	Hela-S3	cervix
36	chr14:68936200-68943600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr14:68936200-68943600	Weak transcription	Brain Anterior Caudate	brain
38	chr14:68936600-68939400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr14:68936800-68940200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr14:68936800-68940200	Enhancers	H9 Cell Line	embryonic stem cell
41	chr14:68936800-68940200	Enhancers	Pancreas	Pancrea
42	chr14:68936800-68943400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr14:68936800-68944800	Enhancers	Primary monocytes fromperipheralblood	blood
44	chr14:68937000-68939400	Enhancers	Monocytes-CD14+_RO01746	blood
45	chr14:68937200-68939600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr14:68937200-68939800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr14:68937200-68939800	Weak transcription	NHEK	skin
48	chr14:68937400-68939800	Weak transcription	A549	lung
49	chr14:68937400-68940200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr14:68937400-68942800	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links