Variant report

Variant	rs10145446
Chromosome Location	chr14:68893845-68893846
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr14:68893491-68894644	A549	lung:	n/a	n/a
2	FOSL1	chr14:68893497-68893995	HCT-116	colon:	n/a	n/a
3	MAX	chr14:68893386-68894698	A549	lung:	n/a	n/a
4	TCF12	chr14:68893537-68894051	A549	lung:	n/a	n/a
5	FOS	chr14:68893651-68893865	MCF10A-Er-Src	breast:	n/a	n/a
6	FOSL2	chr14:68893414-68893993	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68893378..68896303-chr14:69260766..69262455,2	MCF-7	breast:
2	chr14:68891874..68894078-chr14:68933895..68936431,2	MCF-7	breast:

Variant related genes	Relation type
PPIAP6	TF binding region
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10130623	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10131303	0.92[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10133531	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10135443	1.00[ASN][1000 genomes]
rs10142381	0.91[ASN][1000 genomes]
rs10144394	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10145082	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10149278	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10151245	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11625077	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11626013	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11626015	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11846851	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1570107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17105494	1.00[GIH][hapmap]
rs17105501	1.00[GIH][hapmap]
rs17105545	0.85[CHD][hapmap];1.00[GIH][hapmap]
rs17105601	0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs17105664	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs28376370	0.83[ASN][1000 genomes]
rs28655994	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3784127	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs60145217	0.91[ASN][1000 genomes]
rs7142184	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73276276	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7359118	1.00[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68886200-68894800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:68886600-68903200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:68888000-68901000	Weak transcription	Primary T cells from cord blood	blood
4	chr14:68893200-68894000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr14:68893200-68894000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr14:68893400-68894000	ZNF genes & repeats	Fetal Intestine Small	intestine
7	chr14:68893600-68894000	ZNF genes & repeats	Lung	lung
8	chr14:68893600-68894200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr14:68893600-68894200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr14:68893600-68894200	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr14:68893600-68894800	Flanking Active TSS	A549	lung
12	chr14:68893800-68894000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr14:68893800-68894200	Enhancers	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links