Variant report

Variant	rs17105545
Chromosome Location	chr14:68870758-68870759
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68778996..68781064-chr14:68869621..68871388,2	MCF-7	breast:
2	chr14:68863838..68866613-chr14:68869983..68873336,6	MCF-7	breast:
3	chr14:68858725..68872867-chr14:69250734..69263104,36	MCF-7	breast:
4	chr14:68657209..68659073-chr14:68869497..68871337,2	MCF-7	breast:
5	chr14:68869686..68872632-chr14:68873283..68875194,2	MCF-7	breast:
6	chr14:68866618..68869023-chr14:68869534..68873462,3	K562	blood:
7	chr14:68740317..68742420-chr14:68870103..68871791,2	MCF-7	breast:
8	chr14:68868129..68871052-chr14:68933938..68936786,3	MCF-7	breast:
9	chr14:68867029..68869423-chr14:68870114..68872143,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10131303	1.00[GIH][hapmap]
rs10145446	0.85[CHD][hapmap];1.00[GIH][hapmap]
rs11626015	0.85[CHD][hapmap];1.00[GIH][hapmap]
rs1570107	0.85[CHD][hapmap];1.00[GIH][hapmap]
rs17105494	0.85[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs17105501	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs17105601	0.85[CHD][hapmap];1.00[GIH][hapmap]
rs17105664	0.85[CHD][hapmap];1.00[GIH][hapmap]
rs7149619	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7359118	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs749350	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs749352	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9323509	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68859800-68871400	Weak transcription	Gastric	stomach
2	chr14:68861800-68871400	Weak transcription	Right Ventricle	heart
3	chr14:68863600-68877200	Enhancers	Primary B cells from peripheral blood	blood
4	chr14:68864400-68874400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr14:68864800-68871400	Weak transcription	Esophagus	oesophagus
6	chr14:68864800-68874200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr14:68864800-68878000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr14:68865000-68872400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr14:68865000-68877000	Weak transcription	Pancreas	Pancrea
10	chr14:68865200-68871200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr14:68865400-68870800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr14:68865800-68874600	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr14:68866200-68873200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr14:68866400-68873400	Enhancers	HMEC	breast
15	chr14:68866600-68871000	Enhancers	Rectal Smooth Muscle	rectum
16	chr14:68866600-68871800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr14:68866600-68872200	Enhancers	Fetal Thymus	thymus
18	chr14:68866600-68873000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr14:68866600-68873400	Enhancers	Placenta Amnion	Placenta Amnion
20	chr14:68866800-68871200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr14:68866800-68871800	Enhancers	Fetal Lung	lung
22	chr14:68866800-68872200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr14:68866800-68873400	Enhancers	NHLF	lung
24	chr14:68867200-68871200	Weak transcription	Colonic Mucosa	Colon
25	chr14:68867200-68871200	Weak transcription	Fetal Stomach	stomach
26	chr14:68867200-68871400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr14:68867200-68871600	Enhancers	Fetal Kidney	kidney
28	chr14:68867200-68871800	Enhancers	Fetal Heart	heart
29	chr14:68867200-68874400	Weak transcription	Fetal Intestine Large	intestine
30	chr14:68867200-68875200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr14:68867200-68876200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr14:68867200-68876400	Weak transcription	Fetal Muscle Trunk	muscle
33	chr14:68867200-68886400	Weak transcription	Dnd41	blood
34	chr14:68867400-68872800	Weak transcription	HSMM	muscle
35	chr14:68867400-68874200	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr14:68867800-68871200	Weak transcription	Small Intestine	intestine
37	chr14:68867800-68871800	Enhancers	Ovary	ovary
38	chr14:68868000-68872200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
39	chr14:68868000-68872600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr14:68868200-68871200	Weak transcription	Thymus	Thymus
41	chr14:68868200-68874600	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr14:68868200-68887200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr14:68868400-68871400	Weak transcription	Brain Anterior Caudate	brain
44	chr14:68868400-68871800	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr14:68868400-68874600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr14:68868400-68876000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr14:68868600-68873400	Enhancers	Primary T cells from cord blood	blood
48	chr14:68868800-68871000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr14:68868800-68871000	Enhancers	Adipose Nuclei	Adipose
50	chr14:68868800-68871400	Flanking Active TSS	GM12878-XiMat	blood

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