Variant report

Variant	rs7359118
Chromosome Location	chr14:68879091-68879092
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68878300..68881493-chr14:69259065..69264364,5	MCF-7	breast:
2	chr14:68878806..68882787-chr14:68883968..68886756,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10131303	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs10133531	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs10144394	1.00[JPT][hapmap]
rs10145082	1.00[JPT][hapmap]
rs10145446	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs10149278	1.00[JPT][hapmap]
rs10151245	1.00[JPT][hapmap]
rs11626015	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1570107	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs17105229	1.00[MEX][hapmap]
rs17105243	1.00[MEX][hapmap]
rs17105494	0.85[CHB][hapmap]
rs17105501	1.00[CHB][hapmap];1.00[TSI][hapmap]
rs17105545	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17105601	1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs17105664	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs17105879	1.00[MEX][hapmap]
rs2525502	1.00[MEX][hapmap]
rs2525518	1.00[MEX][hapmap]
rs2842324	1.00[MEX][hapmap]
rs2842336	1.00[MEX][hapmap]
rs2842337	1.00[MEX][hapmap]
rs3784127	1.00[JPT][hapmap]
rs7149619	1.00[CHB][hapmap]
rs7158636	1.00[MEX][hapmap]
rs749350	1.00[CHB][hapmap]
rs749352	1.00[CHB][hapmap]
rs8005466	1.00[MEX][hapmap]
rs9323509	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68867200-68886400	Weak transcription	Dnd41	blood
2	chr14:68868200-68887200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr14:68871800-68880800	Weak transcription	Fetal Lung	lung
4	chr14:68872200-68883400	Weak transcription	Esophagus	oesophagus
5	chr14:68872800-68879400	Weak transcription	HUVEC	blood vessel
6	chr14:68873400-68883800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr14:68874200-68879200	Enhancers	A549	lung
8	chr14:68874800-68880400	Weak transcription	Small Intestine	intestine
9	chr14:68875000-68879400	Weak transcription	Stomach Mucosa	stomach
10	chr14:68875000-68883800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr14:68875000-68883800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr14:68875200-68879200	Weak transcription	Fetal Intestine Large	intestine
13	chr14:68875400-68879200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr14:68875400-68879200	Weak transcription	Fetal Intestine Small	intestine
15	chr14:68875400-68881400	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr14:68875400-68884200	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr14:68876000-68880000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr14:68876200-68879800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr14:68876400-68879400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr14:68876400-68880800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr14:68876400-68882000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr14:68876600-68879200	Weak transcription	Osteobl	bone
23	chr14:68876600-68879600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr14:68877000-68880400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr14:68877000-68885600	Weak transcription	Primary T cells from cord blood	blood
26	chr14:68877000-68886000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr14:68877200-68881800	Weak transcription	Primary B cells from peripheral blood	blood
28	chr14:68877200-68890600	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr14:68877400-68880400	Weak transcription	Ovary	ovary
30	chr14:68877400-68881200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr14:68877400-68881800	Weak transcription	Fetal Muscle Leg	muscle
32	chr14:68877400-68882000	Weak transcription	Pancreas	Pancrea
33	chr14:68877400-68882800	Weak transcription	Primary B cells from cord blood	blood
34	chr14:68877400-68885200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr14:68878600-68880200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr14:68878600-68880400	Enhancers	HMEC	breast
37	chr14:68878800-68879200	Enhancers	NHDF-Ad	bronchial
38	chr14:68878800-68879400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr14:68878800-68880200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr14:68878800-68880200	Enhancers	NHEK	skin
41	chr14:68879000-68879600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr14:68879000-68879800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr14:68879000-68879800	Enhancers	Muscle Satellite Cultured Cells	--
44	chr14:68879000-68880200	Enhancers	NH-A	brain
45	chr14:68879000-68880200	Enhancers	NHLF	lung
46	chr14:68879000-68880600	Enhancers	Duodenum Mucosa	Duodenum
47	chr14:68879000-68881400	Enhancers	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links